Gene : AT3G05540 A. thaliana TAIR10
Defline:  (1 of 2) PTHR11991 - TRANSLATIONALLY CONTROLLED TUMOR PROTEIN-RELATED Genomic Order:  513
Name:  ? AT3G05540 Secondary Identifier:  ? PAC:19665229
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G05540 0.5kb upstream 0.5kb upstream 2044 true Chr3: 1606487-1608530 Arabidopsis thaliana
AT3G05540 0.5kb upstream 0.5kb upstream 500 false Chr3: 1608031-1608530 Arabidopsis thaliana
AT3G05540 0.5kb downstream 0.5kb downstream 2044 true Chr3: 1605987-1608030 Arabidopsis thaliana
AT3G05540 0.5kb downstream 0.5kb downstream 500 false Chr3: 1605987-1606486 Arabidopsis thaliana
AT3G05540 1.0kb upstream 1.0kb upstream 2544 true Chr3: 1606487-1609030 Arabidopsis thaliana
AT3G05540 1.0kb upstream 1.0kb upstream 1000 false Chr3: 1608031-1609030 Arabidopsis thaliana
AT3G05540 1.0kb downstream 1.0kb downstream 2544 true Chr3: 1605487-1608030 Arabidopsis thaliana
AT3G05540 1.0kb downstream 1.0kb downstream 1000 false Chr3: 1605487-1606486 Arabidopsis thaliana
AT3G05540 2.0kb upstream 2.0kb upstream 3544 true Chr3: 1606487-1610030 Arabidopsis thaliana
AT3G05540 2.0kb upstream 2.0kb upstream 2000 false Chr3: 1608031-1610030 Arabidopsis thaliana
AT3G05540 2.0kb downstream 2.0kb downstream 3544 true Chr3: 1604487-1608030 Arabidopsis thaliana
AT3G05540 2.0kb downstream 2.0kb downstream 2000 false Chr3: 1604487-1606486 Arabidopsis thaliana
AT3G05540 5.0kb upstream 5.0kb upstream 6544 true Chr3: 1606487-1613030 Arabidopsis thaliana
AT3G05540 5.0kb upstream 5.0kb upstream 5000 false Chr3: 1608031-1613030 Arabidopsis thaliana
AT3G05540 5.0kb downstream 5.0kb downstream 6544 true Chr3: 1601487-1608030 Arabidopsis thaliana
AT3G05540 5.0kb downstream 5.0kb downstream 5000 false Chr3: 1601487-1606486 Arabidopsis thaliana
AT3G05540 10.0kb upstream 10.0kb upstream 11544 true Chr3: 1606487-1618030 Arabidopsis thaliana
AT3G05540 10.0kb upstream 10.0kb upstream 10000 false Chr3: 1608031-1618030 Arabidopsis thaliana
AT3G05540 10.0kb downstream 10.0kb downstream 11544 true Chr3: 1596487-1608030 Arabidopsis thaliana
AT3G05540 10.0kb downstream 10.0kb downstream 10000 false Chr3: 1596487-1606486 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377842 5261 Brassicaceae View MSA
123839856 5264 Brassicales-Malvales View MSA
124343288 5266 SBM View MSA
124239278 5268 Malvidae View MSA
124072412 5270 Rosid View MSA
123743771 5271 Pentapetalae View MSA
122796056 5272 Eudicot View MSA
122046002 5273 Angiosperm View MSA
121343936 5274 Embryophyte View MSA
123424738 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain