Gene : AT3G05560 A. thaliana TAIR10
Defline:  (1 of 3) K02891 - large subunit ribosomal protein L22e (RP-L22e, RPL22) Genomic Order:  516
Name:  ? AT3G05560 Secondary Identifier:  ? PAC:19665193
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G05560 0.5kb upstream 0.5kb upstream 1829 true Chr3: 1613678-1615506 Arabidopsis thaliana
AT3G05560 0.5kb upstream 0.5kb upstream 500 false Chr3: 1613678-1614177 Arabidopsis thaliana
AT3G05560 0.5kb downstream 0.5kb downstream 1829 true Chr3: 1614178-1616006 Arabidopsis thaliana
AT3G05560 0.5kb downstream 0.5kb downstream 500 false Chr3: 1615507-1616006 Arabidopsis thaliana
AT3G05560 1.0kb upstream 1.0kb upstream 2329 true Chr3: 1613178-1615506 Arabidopsis thaliana
AT3G05560 1.0kb upstream 1.0kb upstream 1000 false Chr3: 1613178-1614177 Arabidopsis thaliana
AT3G05560 1.0kb downstream 1.0kb downstream 2329 true Chr3: 1614178-1616506 Arabidopsis thaliana
AT3G05560 1.0kb downstream 1.0kb downstream 1000 false Chr3: 1615507-1616506 Arabidopsis thaliana
AT3G05560 2.0kb upstream 2.0kb upstream 3329 true Chr3: 1612178-1615506 Arabidopsis thaliana
AT3G05560 2.0kb upstream 2.0kb upstream 2000 false Chr3: 1612178-1614177 Arabidopsis thaliana
AT3G05560 2.0kb downstream 2.0kb downstream 3329 true Chr3: 1614178-1617506 Arabidopsis thaliana
AT3G05560 2.0kb downstream 2.0kb downstream 2000 false Chr3: 1615507-1617506 Arabidopsis thaliana
AT3G05560 5.0kb upstream 5.0kb upstream 6329 true Chr3: 1609178-1615506 Arabidopsis thaliana
AT3G05560 5.0kb upstream 5.0kb upstream 5000 false Chr3: 1609178-1614177 Arabidopsis thaliana
AT3G05560 5.0kb downstream 5.0kb downstream 6329 true Chr3: 1614178-1620506 Arabidopsis thaliana
AT3G05560 5.0kb downstream 5.0kb downstream 5000 false Chr3: 1615507-1620506 Arabidopsis thaliana
AT3G05560 10.0kb upstream 10.0kb upstream 11329 true Chr3: 1604178-1615506 Arabidopsis thaliana
AT3G05560 10.0kb upstream 10.0kb upstream 10000 false Chr3: 1604178-1614177 Arabidopsis thaliana
AT3G05560 10.0kb downstream 10.0kb downstream 11329 true Chr3: 1614178-1625506 Arabidopsis thaliana
AT3G05560 10.0kb downstream 10.0kb downstream 10000 false Chr3: 1615507-1625506 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380330 5261 Brassicaceae View MSA
123840472 5264 Brassicales-Malvales View MSA
124339112 5266 SBM View MSA
124244109 5268 Malvidae View MSA
124073965 5270 Rosid View MSA
123748426 5271 Pentapetalae View MSA
122787714 5272 Eudicot View MSA
122045649 5273 Angiosperm View MSA
121348582 5274 Embryophyte View MSA
123423882 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 38.791     High  
cufflinks 43.995     High  
cufflinks 37.66     High  
cufflinks 44.556     High  
cufflinks 27.776     High Low
cufflinks 55.83     High High

0 Strain