Gene : AT3G05550 A. thaliana TAIR10
Defline:  (1 of 3) PF04588 - Hypoxia induced protein conserved region (HIG_1_N) Genomic Order:  515
Name:  ? AT3G05550 Secondary Identifier:  ? PAC:19663079
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G05550 0.5kb upstream 0.5kb upstream 1389 true Chr3: 1612360-1613748 Arabidopsis thaliana
AT3G05550 0.5kb upstream 0.5kb upstream 500 false Chr3: 1612360-1612859 Arabidopsis thaliana
AT3G05550 0.5kb downstream 0.5kb downstream 1389 true Chr3: 1612860-1614248 Arabidopsis thaliana
AT3G05550 0.5kb downstream 0.5kb downstream 500 false Chr3: 1613749-1614248 Arabidopsis thaliana
AT3G05550 1.0kb upstream 1.0kb upstream 1889 true Chr3: 1611860-1613748 Arabidopsis thaliana
AT3G05550 1.0kb upstream 1.0kb upstream 1000 false Chr3: 1611860-1612859 Arabidopsis thaliana
AT3G05550 1.0kb downstream 1.0kb downstream 1889 true Chr3: 1612860-1614748 Arabidopsis thaliana
AT3G05550 1.0kb downstream 1.0kb downstream 1000 false Chr3: 1613749-1614748 Arabidopsis thaliana
AT3G05550 2.0kb upstream 2.0kb upstream 2889 true Chr3: 1610860-1613748 Arabidopsis thaliana
AT3G05550 2.0kb upstream 2.0kb upstream 2000 false Chr3: 1610860-1612859 Arabidopsis thaliana
AT3G05550 2.0kb downstream 2.0kb downstream 2889 true Chr3: 1612860-1615748 Arabidopsis thaliana
AT3G05550 2.0kb downstream 2.0kb downstream 2000 false Chr3: 1613749-1615748 Arabidopsis thaliana
AT3G05550 5.0kb upstream 5.0kb upstream 5889 true Chr3: 1607860-1613748 Arabidopsis thaliana
AT3G05550 5.0kb upstream 5.0kb upstream 5000 false Chr3: 1607860-1612859 Arabidopsis thaliana
AT3G05550 5.0kb downstream 5.0kb downstream 5889 true Chr3: 1612860-1618748 Arabidopsis thaliana
AT3G05550 5.0kb downstream 5.0kb downstream 5000 false Chr3: 1613749-1618748 Arabidopsis thaliana
AT3G05550 10.0kb upstream 10.0kb upstream 10889 true Chr3: 1602860-1613748 Arabidopsis thaliana
AT3G05550 10.0kb upstream 10.0kb upstream 10000 false Chr3: 1602860-1612859 Arabidopsis thaliana
AT3G05550 10.0kb downstream 10.0kb downstream 10889 true Chr3: 1612860-1623748 Arabidopsis thaliana
AT3G05550 10.0kb downstream 10.0kb downstream 10000 false Chr3: 1613749-1623748 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379648 5261 Brassicaceae View MSA
123833742 5264 Brassicales-Malvales View MSA
124343134 5266 SBM View MSA
124253339 5268 Malvidae View MSA
124071085 5270 Rosid View MSA
123747156 5271 Pentapetalae View MSA
122795420 5272 Eudicot View MSA
122049658 5273 Angiosperm View MSA
123428942 5275 Viridiplantae View MSA
121349742 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.683        
cufflinks 1.639        
cufflinks 0.525       Low
cufflinks 1.947       High
cufflinks 0.915        
cufflinks 1.699        

0 Strain