Gene : ALY2 A. thaliana TAIR10
Primary Identifier:  ? AT3G05380 Defline:  (1 of 2) PTHR21689:SF3 - PROTEIN ALWAYS EARLY 1-RELATED
Genomic Order:  496 Name:  ? AT3G05380
Secondary Identifier:  ? PAC:19661519
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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G05380 0.5kb upstream 0.5kb upstream 7443 true Chr3: 1539027-1546469 Arabidopsis thaliana
AT3G05380 0.5kb upstream 0.5kb upstream 500 false Chr3: 1539027-1539526 Arabidopsis thaliana
AT3G05380 0.5kb downstream 0.5kb downstream 7443 true Chr3: 1539527-1546969 Arabidopsis thaliana
AT3G05380 0.5kb downstream 0.5kb downstream 500 false Chr3: 1546470-1546969 Arabidopsis thaliana
AT3G05380 1.0kb upstream 1.0kb upstream 7943 true Chr3: 1538527-1546469 Arabidopsis thaliana
AT3G05380 1.0kb upstream 1.0kb upstream 1000 false Chr3: 1538527-1539526 Arabidopsis thaliana
AT3G05380 1.0kb downstream 1.0kb downstream 7943 true Chr3: 1539527-1547469 Arabidopsis thaliana
AT3G05380 1.0kb downstream 1.0kb downstream 1000 false Chr3: 1546470-1547469 Arabidopsis thaliana
AT3G05380 2.0kb upstream 2.0kb upstream 8943 true Chr3: 1537527-1546469 Arabidopsis thaliana
AT3G05380 2.0kb upstream 2.0kb upstream 2000 false Chr3: 1537527-1539526 Arabidopsis thaliana
AT3G05380 2.0kb downstream 2.0kb downstream 8943 true Chr3: 1539527-1548469 Arabidopsis thaliana
AT3G05380 2.0kb downstream 2.0kb downstream 2000 false Chr3: 1546470-1548469 Arabidopsis thaliana
AT3G05380 5.0kb upstream 5.0kb upstream 11943 true Chr3: 1534527-1546469 Arabidopsis thaliana
AT3G05380 5.0kb upstream 5.0kb upstream 5000 false Chr3: 1534527-1539526 Arabidopsis thaliana
AT3G05380 5.0kb downstream 5.0kb downstream 11943 true Chr3: 1539527-1551469 Arabidopsis thaliana
AT3G05380 5.0kb downstream 5.0kb downstream 5000 false Chr3: 1546470-1551469 Arabidopsis thaliana
AT3G05380 10.0kb upstream 10.0kb upstream 16943 true Chr3: 1529527-1546469 Arabidopsis thaliana
AT3G05380 10.0kb upstream 10.0kb upstream 10000 false Chr3: 1529527-1539526 Arabidopsis thaliana
AT3G05380 10.0kb downstream 10.0kb downstream 16943 true Chr3: 1539527-1556469 Arabidopsis thaliana
AT3G05380 10.0kb downstream 10.0kb downstream 10000 false Chr3: 1546470-1556469 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040981 5273 Angiosperm View MSA
122379115 5261 Brassicaceae View MSA
123837133 5264 Brassicales-Malvales View MSA
124350607 5266 SBM View MSA
124253154 5268 Malvidae View MSA
124072139 5270 Rosid View MSA
123744019 5271 Pentapetalae View MSA
122796198 5272 Eudicot View MSA
121349318 5274 Embryophyte View MSA
123424502 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.005        
cufflinks 2.155        
cufflinks 0.761       Low
cufflinks 2.221       High
cufflinks 0.891        
cufflinks 1.926        

0 Strain