Gene : AT3G04980 A. thaliana TAIR10
Defline:  (1 of 1) PTHR24078:SF181 - DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN Genomic Order:  450
Name:  ? AT3G04980 Secondary Identifier:  ? PAC:19662818
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G04980 0.5kb upstream 0.5kb upstream 3998 true Chr3: 1378684-1382681 Arabidopsis thaliana
AT3G04980 0.5kb upstream 0.5kb upstream 500 false Chr3: 1382182-1382681 Arabidopsis thaliana
AT3G04980 0.5kb downstream 0.5kb downstream 3998 true Chr3: 1378184-1382181 Arabidopsis thaliana
AT3G04980 0.5kb downstream 0.5kb downstream 500 false Chr3: 1378184-1378683 Arabidopsis thaliana
AT3G04980 1.0kb upstream 1.0kb upstream 4498 true Chr3: 1378684-1383181 Arabidopsis thaliana
AT3G04980 1.0kb upstream 1.0kb upstream 1000 false Chr3: 1382182-1383181 Arabidopsis thaliana
AT3G04980 1.0kb downstream 1.0kb downstream 4498 true Chr3: 1377684-1382181 Arabidopsis thaliana
AT3G04980 1.0kb downstream 1.0kb downstream 1000 false Chr3: 1377684-1378683 Arabidopsis thaliana
AT3G04980 2.0kb upstream 2.0kb upstream 5498 true Chr3: 1378684-1384181 Arabidopsis thaliana
AT3G04980 2.0kb upstream 2.0kb upstream 2000 false Chr3: 1382182-1384181 Arabidopsis thaliana
AT3G04980 2.0kb downstream 2.0kb downstream 5498 true Chr3: 1376684-1382181 Arabidopsis thaliana
AT3G04980 2.0kb downstream 2.0kb downstream 2000 false Chr3: 1376684-1378683 Arabidopsis thaliana
AT3G04980 5.0kb upstream 5.0kb upstream 8498 true Chr3: 1378684-1387181 Arabidopsis thaliana
AT3G04980 5.0kb upstream 5.0kb upstream 5000 false Chr3: 1382182-1387181 Arabidopsis thaliana
AT3G04980 5.0kb downstream 5.0kb downstream 8498 true Chr3: 1373684-1382181 Arabidopsis thaliana
AT3G04980 5.0kb downstream 5.0kb downstream 5000 false Chr3: 1373684-1378683 Arabidopsis thaliana
AT3G04980 10.0kb upstream 10.0kb upstream 13498 true Chr3: 1378684-1392181 Arabidopsis thaliana
AT3G04980 10.0kb upstream 10.0kb upstream 10000 false Chr3: 1382182-1392181 Arabidopsis thaliana
AT3G04980 10.0kb downstream 10.0kb downstream 13498 true Chr3: 1368684-1382181 Arabidopsis thaliana
AT3G04980 10.0kb downstream 10.0kb downstream 10000 false Chr3: 1368684-1378683 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379398 5261 Brassicaceae View MSA
123838566 5264 Brassicales-Malvales View MSA
124337519 5266 SBM View MSA
124251082 5268 Malvidae View MSA
124073467 5270 Rosid View MSA
123743094 5271 Pentapetalae View MSA
122796940 5272 Eudicot View MSA
122050144 5273 Angiosperm View MSA
123429067 5275 Viridiplantae View MSA
121348216 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.133       High
cufflinks 0.829       Low
cufflinks 1.506        
cufflinks 0.999        
cufflinks 1.344        
cufflinks 1.315        

0 Strain