Gene : AT3G04160 A. thaliana TAIR10
Defline:  (1 of 1) PTHR21402:SF10 - U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 48 KDA PROTEIN Genomic Order:  357
Name:  ? AT3G04160 Secondary Identifier:  ? PAC:19661361
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G04160 0.5kb upstream 0.5kb upstream 3700 true Chr3: 1091147-1094846 Arabidopsis thaliana
AT3G04160 0.5kb upstream 0.5kb upstream 500 false Chr3: 1094347-1094846 Arabidopsis thaliana
AT3G04160 0.5kb downstream 0.5kb downstream 3700 true Chr3: 1090647-1094346 Arabidopsis thaliana
AT3G04160 0.5kb downstream 0.5kb downstream 500 false Chr3: 1090647-1091146 Arabidopsis thaliana
AT3G04160 1.0kb upstream 1.0kb upstream 4200 true Chr3: 1091147-1095346 Arabidopsis thaliana
AT3G04160 1.0kb upstream 1.0kb upstream 1000 false Chr3: 1094347-1095346 Arabidopsis thaliana
AT3G04160 1.0kb downstream 1.0kb downstream 4200 true Chr3: 1090147-1094346 Arabidopsis thaliana
AT3G04160 1.0kb downstream 1.0kb downstream 1000 false Chr3: 1090147-1091146 Arabidopsis thaliana
AT3G04160 2.0kb upstream 2.0kb upstream 5200 true Chr3: 1091147-1096346 Arabidopsis thaliana
AT3G04160 2.0kb upstream 2.0kb upstream 2000 false Chr3: 1094347-1096346 Arabidopsis thaliana
AT3G04160 2.0kb downstream 2.0kb downstream 5200 true Chr3: 1089147-1094346 Arabidopsis thaliana
AT3G04160 2.0kb downstream 2.0kb downstream 2000 false Chr3: 1089147-1091146 Arabidopsis thaliana
AT3G04160 5.0kb upstream 5.0kb upstream 8200 true Chr3: 1091147-1099346 Arabidopsis thaliana
AT3G04160 5.0kb upstream 5.0kb upstream 5000 false Chr3: 1094347-1099346 Arabidopsis thaliana
AT3G04160 5.0kb downstream 5.0kb downstream 8200 true Chr3: 1086147-1094346 Arabidopsis thaliana
AT3G04160 5.0kb downstream 5.0kb downstream 5000 false Chr3: 1086147-1091146 Arabidopsis thaliana
AT3G04160 10.0kb upstream 10.0kb upstream 13200 true Chr3: 1091147-1104346 Arabidopsis thaliana
AT3G04160 10.0kb upstream 10.0kb upstream 10000 false Chr3: 1094347-1104346 Arabidopsis thaliana
AT3G04160 10.0kb downstream 10.0kb downstream 13200 true Chr3: 1081147-1094346 Arabidopsis thaliana
AT3G04160 10.0kb downstream 10.0kb downstream 10000 false Chr3: 1081147-1091146 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366888 5261 Brassicaceae View MSA
123828957 5264 Brassicales-Malvales View MSA
124350065 5266 SBM View MSA
124239890 5268 Malvidae View MSA
124063423 5270 Rosid View MSA
123740826 5271 Pentapetalae View MSA
122788385 5272 Eudicot View MSA
122044714 5273 Angiosperm View MSA
121344837 5274 Embryophyte View MSA
123380110 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.704       Low
cufflinks 3.1       High
cufflinks 1.924        
cufflinks 3.455       High
cufflinks 1.863        
cufflinks 2.199        

0 Strain