Gene : AT3G13235 A. thaliana TAIR10
Defline:  (1 of 1) K11885 - DNA damage-inducible protein 1 (DDI1) Genomic Order:  1320
Name:  ? AT3G13235 Secondary Identifier:  ? PAC:19664088
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G13235 0.5kb upstream 0.5kb upstream 3744 true Chr3: 4271212-4274955 Arabidopsis thaliana
AT3G13235 0.5kb upstream 0.5kb upstream 500 false Chr3: 4274456-4274955 Arabidopsis thaliana
AT3G13235 0.5kb downstream 0.5kb downstream 3744 true Chr3: 4270712-4274455 Arabidopsis thaliana
AT3G13235 0.5kb downstream 0.5kb downstream 500 false Chr3: 4270712-4271211 Arabidopsis thaliana
AT3G13235 1.0kb upstream 1.0kb upstream 4244 true Chr3: 4271212-4275455 Arabidopsis thaliana
AT3G13235 1.0kb upstream 1.0kb upstream 1000 false Chr3: 4274456-4275455 Arabidopsis thaliana
AT3G13235 1.0kb downstream 1.0kb downstream 4244 true Chr3: 4270212-4274455 Arabidopsis thaliana
AT3G13235 1.0kb downstream 1.0kb downstream 1000 false Chr3: 4270212-4271211 Arabidopsis thaliana
AT3G13235 2.0kb upstream 2.0kb upstream 5244 true Chr3: 4271212-4276455 Arabidopsis thaliana
AT3G13235 2.0kb upstream 2.0kb upstream 2000 false Chr3: 4274456-4276455 Arabidopsis thaliana
AT3G13235 2.0kb downstream 2.0kb downstream 5244 true Chr3: 4269212-4274455 Arabidopsis thaliana
AT3G13235 2.0kb downstream 2.0kb downstream 2000 false Chr3: 4269212-4271211 Arabidopsis thaliana
AT3G13235 5.0kb upstream 5.0kb upstream 8244 true Chr3: 4271212-4279455 Arabidopsis thaliana
AT3G13235 5.0kb upstream 5.0kb upstream 5000 false Chr3: 4274456-4279455 Arabidopsis thaliana
AT3G13235 5.0kb downstream 5.0kb downstream 8244 true Chr3: 4266212-4274455 Arabidopsis thaliana
AT3G13235 5.0kb downstream 5.0kb downstream 5000 false Chr3: 4266212-4271211 Arabidopsis thaliana
AT3G13235 10.0kb upstream 10.0kb upstream 13244 true Chr3: 4271212-4284455 Arabidopsis thaliana
AT3G13235 10.0kb upstream 10.0kb upstream 10000 false Chr3: 4274456-4284455 Arabidopsis thaliana
AT3G13235 10.0kb downstream 10.0kb downstream 13244 true Chr3: 4261212-4274455 Arabidopsis thaliana
AT3G13235 10.0kb downstream 10.0kb downstream 10000 false Chr3: 4261212-4271211 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366727 5261 Brassicaceae View MSA
123834951 5264 Brassicales-Malvales View MSA
124350826 5266 SBM View MSA
124240727 5268 Malvidae View MSA
124068287 5270 Rosid View MSA
123746680 5271 Pentapetalae View MSA
122792691 5272 Eudicot View MSA
122047571 5273 Angiosperm View MSA
121343926 5274 Embryophyte View MSA
123424063 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.296        
cufflinks 3.503        
cufflinks 2.874       Low
cufflinks 3.707        
cufflinks 3.023        
cufflinks 4.65       High

0 Strain