Gene : RRP45a A. thaliana TAIR10
Primary Identifier:  ? AT3G12990 Defline:  (1 of 2) K03678 - exosome complex component RRP45 (RRP45, EXOSC9)
Genomic Order:  1285 Name:  ? AT3G12990
Secondary Identifier:  ? PAC:19661153
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G12990 0.5kb upstream 0.5kb upstream 2279 true Chr3: 4155686-4157964 Arabidopsis thaliana
AT3G12990 0.5kb upstream 0.5kb upstream 500 false Chr3: 4155686-4156185 Arabidopsis thaliana
AT3G12990 0.5kb downstream 0.5kb downstream 2279 true Chr3: 4156186-4158464 Arabidopsis thaliana
AT3G12990 0.5kb downstream 0.5kb downstream 500 false Chr3: 4157965-4158464 Arabidopsis thaliana
AT3G12990 1.0kb upstream 1.0kb upstream 2779 true Chr3: 4155186-4157964 Arabidopsis thaliana
AT3G12990 1.0kb upstream 1.0kb upstream 1000 false Chr3: 4155186-4156185 Arabidopsis thaliana
AT3G12990 1.0kb downstream 1.0kb downstream 2779 true Chr3: 4156186-4158964 Arabidopsis thaliana
AT3G12990 1.0kb downstream 1.0kb downstream 1000 false Chr3: 4157965-4158964 Arabidopsis thaliana
AT3G12990 2.0kb upstream 2.0kb upstream 3779 true Chr3: 4154186-4157964 Arabidopsis thaliana
AT3G12990 2.0kb upstream 2.0kb upstream 2000 false Chr3: 4154186-4156185 Arabidopsis thaliana
AT3G12990 2.0kb downstream 2.0kb downstream 3779 true Chr3: 4156186-4159964 Arabidopsis thaliana
AT3G12990 2.0kb downstream 2.0kb downstream 2000 false Chr3: 4157965-4159964 Arabidopsis thaliana
AT3G12990 5.0kb upstream 5.0kb upstream 6779 true Chr3: 4151186-4157964 Arabidopsis thaliana
AT3G12990 5.0kb upstream 5.0kb upstream 5000 false Chr3: 4151186-4156185 Arabidopsis thaliana
AT3G12990 5.0kb downstream 5.0kb downstream 6779 true Chr3: 4156186-4162964 Arabidopsis thaliana
AT3G12990 5.0kb downstream 5.0kb downstream 5000 false Chr3: 4157965-4162964 Arabidopsis thaliana
AT3G12990 10.0kb upstream 10.0kb upstream 11779 true Chr3: 4146186-4157964 Arabidopsis thaliana
AT3G12990 10.0kb upstream 10.0kb upstream 10000 false Chr3: 4146186-4156185 Arabidopsis thaliana
AT3G12990 10.0kb downstream 10.0kb downstream 11779 true Chr3: 4156186-4167964 Arabidopsis thaliana
AT3G12990 10.0kb downstream 10.0kb downstream 10000 false Chr3: 4157965-4167964 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040877 5273 Angiosperm View MSA
122329930 5261 Brassicaceae Singleton cluster - no MSA
123839463 5264 Brassicales-Malvales View MSA
124322609 5266 SBM View MSA
124253042 5268 Malvidae View MSA
124037304 5270 Rosid View MSA
123744481 5271 Pentapetalae View MSA
122787002 5272 Eudicot View MSA
121343875 5274 Embryophyte View MSA
123425842 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.807       High
cufflinks 2.581        
cufflinks 2.273       Low
cufflinks 2.732        
cufflinks 2.456        
cufflinks 2.405        

0 Strain