Gene : AT3G13020 A. thaliana TAIR10
Defline:  (1 of 3) PTHR32166:SF20 - HAT TRANSPOSON SUPERFAMILY PROTEIN Genomic Order:  1288
Name:  ? AT3G13020 Secondary Identifier:  ? PAC:19660751
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G13020 0.5kb upstream 0.5kb upstream 2423 true Chr3: 4166995-4169417 Arabidopsis thaliana
AT3G13020 0.5kb upstream 0.5kb upstream 500 false Chr3: 4168918-4169417 Arabidopsis thaliana
AT3G13020 0.5kb downstream 0.5kb downstream 2423 true Chr3: 4166495-4168917 Arabidopsis thaliana
AT3G13020 0.5kb downstream 0.5kb downstream 500 false Chr3: 4166495-4166994 Arabidopsis thaliana
AT3G13020 1.0kb upstream 1.0kb upstream 2923 true Chr3: 4166995-4169917 Arabidopsis thaliana
AT3G13020 1.0kb upstream 1.0kb upstream 1000 false Chr3: 4168918-4169917 Arabidopsis thaliana
AT3G13020 1.0kb downstream 1.0kb downstream 2923 true Chr3: 4165995-4168917 Arabidopsis thaliana
AT3G13020 1.0kb downstream 1.0kb downstream 1000 false Chr3: 4165995-4166994 Arabidopsis thaliana
AT3G13020 2.0kb upstream 2.0kb upstream 3923 true Chr3: 4166995-4170917 Arabidopsis thaliana
AT3G13020 2.0kb upstream 2.0kb upstream 2000 false Chr3: 4168918-4170917 Arabidopsis thaliana
AT3G13020 2.0kb downstream 2.0kb downstream 3923 true Chr3: 4164995-4168917 Arabidopsis thaliana
AT3G13020 2.0kb downstream 2.0kb downstream 2000 false Chr3: 4164995-4166994 Arabidopsis thaliana
AT3G13020 5.0kb upstream 5.0kb upstream 6923 true Chr3: 4166995-4173917 Arabidopsis thaliana
AT3G13020 5.0kb upstream 5.0kb upstream 5000 false Chr3: 4168918-4173917 Arabidopsis thaliana
AT3G13020 5.0kb downstream 5.0kb downstream 6923 true Chr3: 4161995-4168917 Arabidopsis thaliana
AT3G13020 5.0kb downstream 5.0kb downstream 5000 false Chr3: 4161995-4166994 Arabidopsis thaliana
AT3G13020 10.0kb upstream 10.0kb upstream 11923 true Chr3: 4166995-4178917 Arabidopsis thaliana
AT3G13020 10.0kb upstream 10.0kb upstream 10000 false Chr3: 4168918-4178917 Arabidopsis thaliana
AT3G13020 10.0kb downstream 10.0kb downstream 11923 true Chr3: 4156995-4168917 Arabidopsis thaliana
AT3G13020 10.0kb downstream 10.0kb downstream 10000 false Chr3: 4156995-4166994 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380911 5261 Brassicaceae View MSA
123832953 5264 Brassicales-Malvales View MSA
124321835 5266 SBM View MSA
124242529 5268 Malvidae View MSA
124050464 5270 Rosid View MSA
123752967 5271 Pentapetalae View MSA
122794205 5272 Eudicot View MSA
122051703 5273 Angiosperm View MSA
121347820 5274 Embryophyte View MSA
123428458 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.708        
cufflinks 2.595        
cufflinks 0.422       Low
cufflinks 2.445        
cufflinks 0.526        
cufflinks 2.268        

0 Strain