Gene : AT3G13000 A. thaliana TAIR10
Defline:  (1 of 13) PF04784//PF14389 - Protein of unknown function, DUF547 (DUF547) // Leucine-zipper of ternary complex factor MIP1 (Lzipper-MIP1) Genomic Order:  1286
Name:  ? AT3G13000 Secondary Identifier:  ? PAC:19661101
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G13000 0.5kb upstream 0.5kb upstream 4599 true Chr3: 4157967-4162565 Arabidopsis thaliana
AT3G13000 0.5kb upstream 0.5kb upstream 500 false Chr3: 4162066-4162565 Arabidopsis thaliana
AT3G13000 0.5kb downstream 0.5kb downstream 4599 true Chr3: 4157467-4162065 Arabidopsis thaliana
AT3G13000 0.5kb downstream 0.5kb downstream 500 false Chr3: 4157467-4157966 Arabidopsis thaliana
AT3G13000 1.0kb upstream 1.0kb upstream 5099 true Chr3: 4157967-4163065 Arabidopsis thaliana
AT3G13000 1.0kb upstream 1.0kb upstream 1000 false Chr3: 4162066-4163065 Arabidopsis thaliana
AT3G13000 1.0kb downstream 1.0kb downstream 5099 true Chr3: 4156967-4162065 Arabidopsis thaliana
AT3G13000 1.0kb downstream 1.0kb downstream 1000 false Chr3: 4156967-4157966 Arabidopsis thaliana
AT3G13000 2.0kb upstream 2.0kb upstream 6099 true Chr3: 4157967-4164065 Arabidopsis thaliana
AT3G13000 2.0kb upstream 2.0kb upstream 2000 false Chr3: 4162066-4164065 Arabidopsis thaliana
AT3G13000 2.0kb downstream 2.0kb downstream 6099 true Chr3: 4155967-4162065 Arabidopsis thaliana
AT3G13000 2.0kb downstream 2.0kb downstream 2000 false Chr3: 4155967-4157966 Arabidopsis thaliana
AT3G13000 5.0kb upstream 5.0kb upstream 9099 true Chr3: 4157967-4167065 Arabidopsis thaliana
AT3G13000 5.0kb upstream 5.0kb upstream 5000 false Chr3: 4162066-4167065 Arabidopsis thaliana
AT3G13000 5.0kb downstream 5.0kb downstream 9099 true Chr3: 4152967-4162065 Arabidopsis thaliana
AT3G13000 5.0kb downstream 5.0kb downstream 5000 false Chr3: 4152967-4157966 Arabidopsis thaliana
AT3G13000 10.0kb upstream 10.0kb upstream 14099 true Chr3: 4157967-4172065 Arabidopsis thaliana
AT3G13000 10.0kb upstream 10.0kb upstream 10000 false Chr3: 4162066-4172065 Arabidopsis thaliana
AT3G13000 10.0kb downstream 10.0kb downstream 14099 true Chr3: 4147967-4162065 Arabidopsis thaliana
AT3G13000 10.0kb downstream 10.0kb downstream 10000 false Chr3: 4147967-4157966 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367643 5261 Brassicaceae View MSA
123829360 5264 Brassicales-Malvales View MSA
124339548 5266 SBM View MSA
124248467 5268 Malvidae View MSA
124071956 5270 Rosid View MSA
123741480 5271 Pentapetalae View MSA
122796388 5272 Eudicot View MSA
122050370 5273 Angiosperm View MSA
121350596 5274 Embryophyte View MSA
123381815 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.901       High
cufflinks 1.753        
cufflinks 1.609        
cufflinks 1.945        
cufflinks 1.1       Low
cufflinks 1.334        

0 Strain