Gene : PGK1 A. thaliana TAIR10
Primary Identifier:  ? AT3G12780 Defline:  (1 of 3) 2.7.2.3 - Phosphoglycerate kinase
Genomic Order:  1261 Name:  ? AT3G12780
Secondary Identifier:  ? PAC:19663955
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Sequence Feature Displayer

Ontology Annotation Displayer

9 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana ANAEROFRUCAT-PWY Arabidopsis thaliana pathologic  
Athaliana ANAGLYCOLYSIS-PWY Arabidopsis thaliana pathologic  
Athaliana CALVIN-PWY Arabidopsis thaliana pathologic  
Athaliana GLUCONEO-PWY Arabidopsis thaliana pathologic  
Athaliana PHOTOALL-PWY Arabidopsis thaliana pathologic  
Athaliana PWY-1042 Arabidopsis thaliana pathologic  
Athaliana PWY-5464 Arabidopsis thaliana pathologic  
Athaliana PWY66-399 Arabidopsis thaliana pathologic  
Athaliana SUCSYN-PWY Arabidopsis thaliana pathologic  

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G12780 0.5kb upstream 0.5kb upstream 2836 true Chr3: 4060971-4063806 Arabidopsis thaliana
AT3G12780 0.5kb upstream 0.5kb upstream 500 false Chr3: 4063307-4063806 Arabidopsis thaliana
AT3G12780 0.5kb downstream 0.5kb downstream 2836 true Chr3: 4060471-4063306 Arabidopsis thaliana
AT3G12780 0.5kb downstream 0.5kb downstream 500 false Chr3: 4060471-4060970 Arabidopsis thaliana
AT3G12780 1.0kb upstream 1.0kb upstream 3336 true Chr3: 4060971-4064306 Arabidopsis thaliana
AT3G12780 1.0kb upstream 1.0kb upstream 1000 false Chr3: 4063307-4064306 Arabidopsis thaliana
AT3G12780 1.0kb downstream 1.0kb downstream 3336 true Chr3: 4059971-4063306 Arabidopsis thaliana
AT3G12780 1.0kb downstream 1.0kb downstream 1000 false Chr3: 4059971-4060970 Arabidopsis thaliana
AT3G12780 2.0kb upstream 2.0kb upstream 4336 true Chr3: 4060971-4065306 Arabidopsis thaliana
AT3G12780 2.0kb upstream 2.0kb upstream 2000 false Chr3: 4063307-4065306 Arabidopsis thaliana
AT3G12780 2.0kb downstream 2.0kb downstream 4336 true Chr3: 4058971-4063306 Arabidopsis thaliana
AT3G12780 2.0kb downstream 2.0kb downstream 2000 false Chr3: 4058971-4060970 Arabidopsis thaliana
AT3G12780 5.0kb upstream 5.0kb upstream 7336 true Chr3: 4060971-4068306 Arabidopsis thaliana
AT3G12780 5.0kb upstream 5.0kb upstream 5000 false Chr3: 4063307-4068306 Arabidopsis thaliana
AT3G12780 5.0kb downstream 5.0kb downstream 7336 true Chr3: 4055971-4063306 Arabidopsis thaliana
AT3G12780 5.0kb downstream 5.0kb downstream 5000 false Chr3: 4055971-4060970 Arabidopsis thaliana
AT3G12780 10.0kb upstream 10.0kb upstream 12336 true Chr3: 4060971-4073306 Arabidopsis thaliana
AT3G12780 10.0kb upstream 10.0kb upstream 10000 false Chr3: 4063307-4073306 Arabidopsis thaliana
AT3G12780 10.0kb downstream 10.0kb downstream 12336 true Chr3: 4050971-4063306 Arabidopsis thaliana
AT3G12780 10.0kb downstream 10.0kb downstream 10000 false Chr3: 4050971-4060970 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366001 5261 Brassicaceae View MSA
123832866 5264 Brassicales-Malvales View MSA
124347781 5266 SBM View MSA
124238345 5268 Malvidae View MSA
124066937 5270 Rosid View MSA
123738509 5271 Pentapetalae View MSA
122793227 5272 Eudicot View MSA
122042825 5273 Angiosperm View MSA
121348563 5274 Embryophyte View MSA
123423936 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 666.793     High  
cufflinks 40.08     High  
cufflinks 648.421     High  
cufflinks 35.225     High  
cufflinks 497.856     High  
cufflinks 37.33     High  

0 Strain