Gene : emb2738 A. thaliana TAIR10
Primary Identifier:  ? AT3G12080 Defline:  (1 of 1) PTHR11649//PTHR11649:SF60 - MSS1/TRME-RELATED GTP-BINDING PROTEIN // SUBFAMILY NOT NAMED
Genomic Order:  1187 Name:  ? AT3G12080
Secondary Identifier:  ? PAC:19659702
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G12080 0.5kb upstream 0.5kb upstream 4847 true Chr3: 3847292-3852138 Arabidopsis thaliana
AT3G12080 0.5kb upstream 0.5kb upstream 500 false Chr3: 3847292-3847791 Arabidopsis thaliana
AT3G12080 0.5kb downstream 0.5kb downstream 4847 true Chr3: 3847792-3852638 Arabidopsis thaliana
AT3G12080 0.5kb downstream 0.5kb downstream 500 false Chr3: 3852139-3852638 Arabidopsis thaliana
AT3G12080 1.0kb upstream 1.0kb upstream 5347 true Chr3: 3846792-3852138 Arabidopsis thaliana
AT3G12080 1.0kb upstream 1.0kb upstream 1000 false Chr3: 3846792-3847791 Arabidopsis thaliana
AT3G12080 1.0kb downstream 1.0kb downstream 5347 true Chr3: 3847792-3853138 Arabidopsis thaliana
AT3G12080 1.0kb downstream 1.0kb downstream 1000 false Chr3: 3852139-3853138 Arabidopsis thaliana
AT3G12080 2.0kb upstream 2.0kb upstream 6347 true Chr3: 3845792-3852138 Arabidopsis thaliana
AT3G12080 2.0kb upstream 2.0kb upstream 2000 false Chr3: 3845792-3847791 Arabidopsis thaliana
AT3G12080 2.0kb downstream 2.0kb downstream 6347 true Chr3: 3847792-3854138 Arabidopsis thaliana
AT3G12080 2.0kb downstream 2.0kb downstream 2000 false Chr3: 3852139-3854138 Arabidopsis thaliana
AT3G12080 5.0kb upstream 5.0kb upstream 9347 true Chr3: 3842792-3852138 Arabidopsis thaliana
AT3G12080 5.0kb upstream 5.0kb upstream 5000 false Chr3: 3842792-3847791 Arabidopsis thaliana
AT3G12080 5.0kb downstream 5.0kb downstream 9347 true Chr3: 3847792-3857138 Arabidopsis thaliana
AT3G12080 5.0kb downstream 5.0kb downstream 5000 false Chr3: 3852139-3857138 Arabidopsis thaliana
AT3G12080 10.0kb upstream 10.0kb upstream 14347 true Chr3: 3837792-3852138 Arabidopsis thaliana
AT3G12080 10.0kb upstream 10.0kb upstream 10000 false Chr3: 3837792-3847791 Arabidopsis thaliana
AT3G12080 10.0kb downstream 10.0kb downstream 14347 true Chr3: 3847792-3862138 Arabidopsis thaliana
AT3G12080 10.0kb downstream 10.0kb downstream 10000 false Chr3: 3852139-3862138 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368542 5261 Brassicaceae View MSA
123830642 5264 Brassicales-Malvales View MSA
124350628 5266 SBM View MSA
124243586 5268 Malvidae View MSA
124068964 5270 Rosid View MSA
123747725 5271 Pentapetalae View MSA
122788660 5272 Eudicot View MSA
122045813 5273 Angiosperm View MSA
121347341 5274 Embryophyte View MSA
123428429 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.021       High
cufflinks 2.63        
cufflinks 11.919        
cufflinks 2.674        
cufflinks 9.985        
cufflinks 2.151       Low

0 Strain