Gene : UBP13 A. thaliana TAIR10
Primary Identifier:  ? AT3G11910 Defline:  (1 of 2) K11838 - ubiquitin carboxyl-terminal hydrolase 7 (USP7, UBP15)
Genomic Order:  1168 Name:  ? AT3G11910
Secondary Identifier:  ? PAC:19664730
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G11910 0.5kb upstream 0.5kb upstream 9676 true Chr3: 3761388-3771063 Arabidopsis thaliana
AT3G11910 0.5kb upstream 0.5kb upstream 500 false Chr3: 3770564-3771063 Arabidopsis thaliana
AT3G11910 0.5kb downstream 0.5kb downstream 9676 true Chr3: 3760888-3770563 Arabidopsis thaliana
AT3G11910 0.5kb downstream 0.5kb downstream 500 false Chr3: 3760888-3761387 Arabidopsis thaliana
AT3G11910 1.0kb upstream 1.0kb upstream 10176 true Chr3: 3761388-3771563 Arabidopsis thaliana
AT3G11910 1.0kb upstream 1.0kb upstream 1000 false Chr3: 3770564-3771563 Arabidopsis thaliana
AT3G11910 1.0kb downstream 1.0kb downstream 10176 true Chr3: 3760388-3770563 Arabidopsis thaliana
AT3G11910 1.0kb downstream 1.0kb downstream 1000 false Chr3: 3760388-3761387 Arabidopsis thaliana
AT3G11910 2.0kb upstream 2.0kb upstream 11176 true Chr3: 3761388-3772563 Arabidopsis thaliana
AT3G11910 2.0kb upstream 2.0kb upstream 2000 false Chr3: 3770564-3772563 Arabidopsis thaliana
AT3G11910 2.0kb downstream 2.0kb downstream 11176 true Chr3: 3759388-3770563 Arabidopsis thaliana
AT3G11910 2.0kb downstream 2.0kb downstream 2000 false Chr3: 3759388-3761387 Arabidopsis thaliana
AT3G11910 5.0kb upstream 5.0kb upstream 14176 true Chr3: 3761388-3775563 Arabidopsis thaliana
AT3G11910 5.0kb upstream 5.0kb upstream 5000 false Chr3: 3770564-3775563 Arabidopsis thaliana
AT3G11910 5.0kb downstream 5.0kb downstream 14176 true Chr3: 3756388-3770563 Arabidopsis thaliana
AT3G11910 5.0kb downstream 5.0kb downstream 5000 false Chr3: 3756388-3761387 Arabidopsis thaliana
AT3G11910 10.0kb upstream 10.0kb upstream 19176 true Chr3: 3761388-3780563 Arabidopsis thaliana
AT3G11910 10.0kb upstream 10.0kb upstream 10000 false Chr3: 3770564-3780563 Arabidopsis thaliana
AT3G11910 10.0kb downstream 10.0kb downstream 19176 true Chr3: 3751388-3770563 Arabidopsis thaliana
AT3G11910 10.0kb downstream 10.0kb downstream 10000 false Chr3: 3751388-3761387 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369567 5261 Brassicaceae View MSA
123841260 5264 Brassicales-Malvales View MSA
124343034 5266 SBM View MSA
124243207 5268 Malvidae View MSA
124072091 5270 Rosid View MSA
123746914 5271 Pentapetalae View MSA
122788764 5272 Eudicot View MSA
122042201 5273 Angiosperm View MSA
121346231 5274 Embryophyte View MSA
123427549 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.343        
cufflinks 10.479        
cufflinks 6.131       Low
cufflinks 10.814        
cufflinks 6.395       Low
cufflinks 11.114        

0 Strain