Gene : SPY A. thaliana TAIR10
Primary Identifier:  ? AT3G11540 Defline:  (1 of 1) PTHR23083//PTHR23083:SF397 - TETRATRICOPEPTIDE REPEAT PROTEIN, TPR // UDP-N-ACETYLGLUCOSAMINE--PEPTIDE N-ACETYLGLUCOSAMINYLTRANSFERASE SPINDLY-RELATED
Genomic Order:  1129 Name:  ? AT3G11540
Secondary Identifier:  ? PAC:19659376
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7437 Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G11540 0.5kb upstream 0.5kb upstream 6569 true Chr3: 3631387-3637955 Arabidopsis thaliana
AT3G11540 0.5kb upstream 0.5kb upstream 500 false Chr3: 3631387-3631886 Arabidopsis thaliana
AT3G11540 0.5kb downstream 0.5kb downstream 6569 true Chr3: 3631887-3638455 Arabidopsis thaliana
AT3G11540 0.5kb downstream 0.5kb downstream 500 false Chr3: 3637956-3638455 Arabidopsis thaliana
AT3G11540 1.0kb upstream 1.0kb upstream 7069 true Chr3: 3630887-3637955 Arabidopsis thaliana
AT3G11540 1.0kb upstream 1.0kb upstream 1000 false Chr3: 3630887-3631886 Arabidopsis thaliana
AT3G11540 1.0kb downstream 1.0kb downstream 7069 true Chr3: 3631887-3638955 Arabidopsis thaliana
AT3G11540 1.0kb downstream 1.0kb downstream 1000 false Chr3: 3637956-3638955 Arabidopsis thaliana
AT3G11540 2.0kb upstream 2.0kb upstream 8069 true Chr3: 3629887-3637955 Arabidopsis thaliana
AT3G11540 2.0kb upstream 2.0kb upstream 2000 false Chr3: 3629887-3631886 Arabidopsis thaliana
AT3G11540 2.0kb downstream 2.0kb downstream 8069 true Chr3: 3631887-3639955 Arabidopsis thaliana
AT3G11540 2.0kb downstream 2.0kb downstream 2000 false Chr3: 3637956-3639955 Arabidopsis thaliana
AT3G11540 5.0kb upstream 5.0kb upstream 11069 true Chr3: 3626887-3637955 Arabidopsis thaliana
AT3G11540 5.0kb upstream 5.0kb upstream 5000 false Chr3: 3626887-3631886 Arabidopsis thaliana
AT3G11540 5.0kb downstream 5.0kb downstream 11069 true Chr3: 3631887-3642955 Arabidopsis thaliana
AT3G11540 5.0kb downstream 5.0kb downstream 5000 false Chr3: 3637956-3642955 Arabidopsis thaliana
AT3G11540 10.0kb upstream 10.0kb upstream 16069 true Chr3: 3621887-3637955 Arabidopsis thaliana
AT3G11540 10.0kb upstream 10.0kb upstream 10000 false Chr3: 3621887-3631886 Arabidopsis thaliana
AT3G11540 10.0kb downstream 10.0kb downstream 16069 true Chr3: 3631887-3647955 Arabidopsis thaliana
AT3G11540 10.0kb downstream 10.0kb downstream 10000 false Chr3: 3637956-3647955 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377514 5261 Brassicaceae View MSA
123839299 5264 Brassicales-Malvales View MSA
124342319 5266 SBM View MSA
124237438 5268 Malvidae View MSA
124065064 5270 Rosid View MSA
123739134 5271 Pentapetalae View MSA
122791595 5272 Eudicot View MSA
122044417 5273 Angiosperm View MSA
121347707 5274 Embryophyte View MSA
123428836 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.314        
cufflinks 6.903        
cufflinks 3.545       Low
cufflinks 7.7       High
cufflinks 4.1        
cufflinks 6.673        

0 Strain