Gene : AT3G11550 A. thaliana TAIR10
Defline:  (1 of 3) PTHR11615:SF116 - CASPARIAN STRIP MEMBRANE PROTEIN 1-RELATED Genomic Order:  1130
Name:  ? AT3G11550 Secondary Identifier:  ? PAC:19662515
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G11550 0.5kb upstream 0.5kb upstream 1503 true Chr3: 3637695-3639197 Arabidopsis thaliana
AT3G11550 0.5kb upstream 0.5kb upstream 500 false Chr3: 3637695-3638194 Arabidopsis thaliana
AT3G11550 0.5kb downstream 0.5kb downstream 1503 true Chr3: 3638195-3639697 Arabidopsis thaliana
AT3G11550 0.5kb downstream 0.5kb downstream 500 false Chr3: 3639198-3639697 Arabidopsis thaliana
AT3G11550 1.0kb upstream 1.0kb upstream 2003 true Chr3: 3637195-3639197 Arabidopsis thaliana
AT3G11550 1.0kb upstream 1.0kb upstream 1000 false Chr3: 3637195-3638194 Arabidopsis thaliana
AT3G11550 1.0kb downstream 1.0kb downstream 2003 true Chr3: 3638195-3640197 Arabidopsis thaliana
AT3G11550 1.0kb downstream 1.0kb downstream 1000 false Chr3: 3639198-3640197 Arabidopsis thaliana
AT3G11550 2.0kb upstream 2.0kb upstream 3003 true Chr3: 3636195-3639197 Arabidopsis thaliana
AT3G11550 2.0kb upstream 2.0kb upstream 2000 false Chr3: 3636195-3638194 Arabidopsis thaliana
AT3G11550 2.0kb downstream 2.0kb downstream 3003 true Chr3: 3638195-3641197 Arabidopsis thaliana
AT3G11550 2.0kb downstream 2.0kb downstream 2000 false Chr3: 3639198-3641197 Arabidopsis thaliana
AT3G11550 5.0kb upstream 5.0kb upstream 6003 true Chr3: 3633195-3639197 Arabidopsis thaliana
AT3G11550 5.0kb upstream 5.0kb upstream 5000 false Chr3: 3633195-3638194 Arabidopsis thaliana
AT3G11550 5.0kb downstream 5.0kb downstream 6003 true Chr3: 3638195-3644197 Arabidopsis thaliana
AT3G11550 5.0kb downstream 5.0kb downstream 5000 false Chr3: 3639198-3644197 Arabidopsis thaliana
AT3G11550 10.0kb upstream 10.0kb upstream 11003 true Chr3: 3628195-3639197 Arabidopsis thaliana
AT3G11550 10.0kb upstream 10.0kb upstream 10000 false Chr3: 3628195-3638194 Arabidopsis thaliana
AT3G11550 10.0kb downstream 10.0kb downstream 11003 true Chr3: 3638195-3649197 Arabidopsis thaliana
AT3G11550 10.0kb downstream 10.0kb downstream 10000 false Chr3: 3639198-3649197 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370133 5261 Brassicaceae View MSA
123840781 5264 Brassicales-Malvales View MSA
124340578 5266 SBM View MSA
124251067 5268 Malvidae View MSA
124067511 5270 Rosid View MSA
123750360 5271 Pentapetalae View MSA
122793226 5272 Eudicot View MSA
122046070 5273 Angiosperm View MSA
121351638 5274 Embryophyte View MSA
123382256 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.206        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 2.977        
cufflinks 0.027     Low Low
cufflinks 5.101        

0 Strain