Gene : AT3G11580 A. thaliana TAIR10
Defline:  (1 of 2) PTHR31140//PTHR31140:SF2 - FAMILY NOT NAMED // B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VAL3 Genomic Order:  1133
Name:  ? AT3G11580 Secondary Identifier:  ? PAC:19660237
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G11580 0.5kb upstream 0.5kb upstream 2909 true Chr3: 3648924-3651832 Arabidopsis thaliana
AT3G11580 0.5kb upstream 0.5kb upstream 500 false Chr3: 3651333-3651832 Arabidopsis thaliana
AT3G11580 0.5kb downstream 0.5kb downstream 2909 true Chr3: 3648424-3651332 Arabidopsis thaliana
AT3G11580 0.5kb downstream 0.5kb downstream 500 false Chr3: 3648424-3648923 Arabidopsis thaliana
AT3G11580 1.0kb upstream 1.0kb upstream 3409 true Chr3: 3648924-3652332 Arabidopsis thaliana
AT3G11580 1.0kb upstream 1.0kb upstream 1000 false Chr3: 3651333-3652332 Arabidopsis thaliana
AT3G11580 1.0kb downstream 1.0kb downstream 3409 true Chr3: 3647924-3651332 Arabidopsis thaliana
AT3G11580 1.0kb downstream 1.0kb downstream 1000 false Chr3: 3647924-3648923 Arabidopsis thaliana
AT3G11580 2.0kb upstream 2.0kb upstream 4409 true Chr3: 3648924-3653332 Arabidopsis thaliana
AT3G11580 2.0kb upstream 2.0kb upstream 2000 false Chr3: 3651333-3653332 Arabidopsis thaliana
AT3G11580 2.0kb downstream 2.0kb downstream 4409 true Chr3: 3646924-3651332 Arabidopsis thaliana
AT3G11580 2.0kb downstream 2.0kb downstream 2000 false Chr3: 3646924-3648923 Arabidopsis thaliana
AT3G11580 5.0kb upstream 5.0kb upstream 7409 true Chr3: 3648924-3656332 Arabidopsis thaliana
AT3G11580 5.0kb upstream 5.0kb upstream 5000 false Chr3: 3651333-3656332 Arabidopsis thaliana
AT3G11580 5.0kb downstream 5.0kb downstream 7409 true Chr3: 3643924-3651332 Arabidopsis thaliana
AT3G11580 5.0kb downstream 5.0kb downstream 5000 false Chr3: 3643924-3648923 Arabidopsis thaliana
AT3G11580 10.0kb upstream 10.0kb upstream 12409 true Chr3: 3648924-3661332 Arabidopsis thaliana
AT3G11580 10.0kb upstream 10.0kb upstream 10000 false Chr3: 3651333-3661332 Arabidopsis thaliana
AT3G11580 10.0kb downstream 10.0kb downstream 12409 true Chr3: 3638924-3651332 Arabidopsis thaliana
AT3G11580 10.0kb downstream 10.0kb downstream 10000 false Chr3: 3638924-3648923 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365755 5261 Brassicaceae View MSA
123841427 5264 Brassicales-Malvales View MSA
124349842 5266 SBM View MSA
124251468 5268 Malvidae View MSA
124063141 5270 Rosid View MSA
123743640 5271 Pentapetalae View MSA
122794380 5272 Eudicot View MSA
122049835 5273 Angiosperm View MSA
121349423 5274 Embryophyte View MSA
123428387 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.939        
cufflinks 0.383       Low
cufflinks 2.38        
cufflinks 1.353        
cufflinks 3.285       High
cufflinks 0.499        

0 Strain