Gene : LGO A. thaliana TAIR10
Primary Identifier:  ? AT3G10525 Defline:  (1 of 2) PTHR33142:SF1 - CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SIM-RELATED
Genomic Order:  1014 Name:  ? AT3G10525
Secondary Identifier:  ? PAC:19663619
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G10525 0.5kb upstream 0.5kb upstream 1171 true Chr3: 3281362-3282532 Arabidopsis thaliana
AT3G10525 0.5kb upstream 0.5kb upstream 500 false Chr3: 3282033-3282532 Arabidopsis thaliana
AT3G10525 0.5kb downstream 0.5kb downstream 1171 true Chr3: 3280862-3282032 Arabidopsis thaliana
AT3G10525 0.5kb downstream 0.5kb downstream 500 false Chr3: 3280862-3281361 Arabidopsis thaliana
AT3G10525 1.0kb upstream 1.0kb upstream 1671 true Chr3: 3281362-3283032 Arabidopsis thaliana
AT3G10525 1.0kb upstream 1.0kb upstream 1000 false Chr3: 3282033-3283032 Arabidopsis thaliana
AT3G10525 1.0kb downstream 1.0kb downstream 1671 true Chr3: 3280362-3282032 Arabidopsis thaliana
AT3G10525 1.0kb downstream 1.0kb downstream 1000 false Chr3: 3280362-3281361 Arabidopsis thaliana
AT3G10525 2.0kb upstream 2.0kb upstream 2671 true Chr3: 3281362-3284032 Arabidopsis thaliana
AT3G10525 2.0kb upstream 2.0kb upstream 2000 false Chr3: 3282033-3284032 Arabidopsis thaliana
AT3G10525 2.0kb downstream 2.0kb downstream 2671 true Chr3: 3279362-3282032 Arabidopsis thaliana
AT3G10525 2.0kb downstream 2.0kb downstream 2000 false Chr3: 3279362-3281361 Arabidopsis thaliana
AT3G10525 5.0kb upstream 5.0kb upstream 5671 true Chr3: 3281362-3287032 Arabidopsis thaliana
AT3G10525 5.0kb upstream 5.0kb upstream 5000 false Chr3: 3282033-3287032 Arabidopsis thaliana
AT3G10525 5.0kb downstream 5.0kb downstream 5671 true Chr3: 3276362-3282032 Arabidopsis thaliana
AT3G10525 5.0kb downstream 5.0kb downstream 5000 false Chr3: 3276362-3281361 Arabidopsis thaliana
AT3G10525 10.0kb upstream 10.0kb upstream 10671 true Chr3: 3281362-3292032 Arabidopsis thaliana
AT3G10525 10.0kb upstream 10.0kb upstream 10000 false Chr3: 3282033-3292032 Arabidopsis thaliana
AT3G10525 10.0kb downstream 10.0kb downstream 10671 true Chr3: 3271362-3282032 Arabidopsis thaliana
AT3G10525 10.0kb downstream 10.0kb downstream 10000 false Chr3: 3271362-3281361 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365707 5261 Brassicaceae View MSA
123839799 5264 Brassicales-Malvales View MSA
124351320 5266 SBM View MSA
124246732 5268 Malvidae View MSA
124070924 5270 Rosid View MSA
123751374 5271 Pentapetalae View MSA
122797531 5272 Eudicot View MSA
122050309 5273 Angiosperm View MSA
121311848 5274 Embryophyte View MSA
123349088 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 33.735     High High
cufflinks 2.503       Low
cufflinks 21.997        
cufflinks 4.263        
cufflinks 19.421        
cufflinks 6.521        

0 Strain