Gene : PAL4 A. thaliana TAIR10
Primary Identifier:  ? AT3G10340 Defline:  (1 of 4) 4.3.1.24 - Phenylalanine ammonia-lyase
Genomic Order:  993 Name:  ? AT3G10340
Secondary Identifier:  ? PAC:19660032
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Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-1121 Arabidopsis thaliana pathologic  
Athaliana PWY1F-467 Arabidopsis thaliana pathologic  
Athaliana PWY-7186 Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G10340 0.5kb upstream 0.5kb upstream 4510 true Chr3: 3203513-3208022 Arabidopsis thaliana
AT3G10340 0.5kb upstream 0.5kb upstream 500 false Chr3: 3203513-3204012 Arabidopsis thaliana
AT3G10340 0.5kb downstream 0.5kb downstream 4510 true Chr3: 3204013-3208522 Arabidopsis thaliana
AT3G10340 0.5kb downstream 0.5kb downstream 500 false Chr3: 3208023-3208522 Arabidopsis thaliana
AT3G10340 1.0kb upstream 1.0kb upstream 5010 true Chr3: 3203013-3208022 Arabidopsis thaliana
AT3G10340 1.0kb upstream 1.0kb upstream 1000 false Chr3: 3203013-3204012 Arabidopsis thaliana
AT3G10340 1.0kb downstream 1.0kb downstream 5010 true Chr3: 3204013-3209022 Arabidopsis thaliana
AT3G10340 1.0kb downstream 1.0kb downstream 1000 false Chr3: 3208023-3209022 Arabidopsis thaliana
AT3G10340 2.0kb upstream 2.0kb upstream 6010 true Chr3: 3202013-3208022 Arabidopsis thaliana
AT3G10340 2.0kb upstream 2.0kb upstream 2000 false Chr3: 3202013-3204012 Arabidopsis thaliana
AT3G10340 2.0kb downstream 2.0kb downstream 6010 true Chr3: 3204013-3210022 Arabidopsis thaliana
AT3G10340 2.0kb downstream 2.0kb downstream 2000 false Chr3: 3208023-3210022 Arabidopsis thaliana
AT3G10340 5.0kb upstream 5.0kb upstream 9010 true Chr3: 3199013-3208022 Arabidopsis thaliana
AT3G10340 5.0kb upstream 5.0kb upstream 5000 false Chr3: 3199013-3204012 Arabidopsis thaliana
AT3G10340 5.0kb downstream 5.0kb downstream 9010 true Chr3: 3204013-3213022 Arabidopsis thaliana
AT3G10340 5.0kb downstream 5.0kb downstream 5000 false Chr3: 3208023-3213022 Arabidopsis thaliana
AT3G10340 10.0kb upstream 10.0kb upstream 14010 true Chr3: 3194013-3208022 Arabidopsis thaliana
AT3G10340 10.0kb upstream 10.0kb upstream 10000 false Chr3: 3194013-3204012 Arabidopsis thaliana
AT3G10340 10.0kb downstream 10.0kb downstream 14010 true Chr3: 3204013-3218022 Arabidopsis thaliana
AT3G10340 10.0kb downstream 10.0kb downstream 10000 false Chr3: 3208023-3218022 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121510519 5273 Angiosperm View MSA
122364880 5261 Brassicaceae View MSA
123798854 5264 Brassicales-Malvales View MSA
124296437 5266 SBM View MSA
124148591 5268 Malvidae View MSA
123874554 5270 Rosid View MSA
123458510 5271 Pentapetalae View MSA
122493915 5272 Eudicot View MSA
121351477 5274 Embryophyte View MSA
123382181 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.422        
cufflinks 9.169        
cufflinks 0.702       Low
cufflinks 17.657       High
cufflinks 0.696       Low
cufflinks 19.493       High

0 Strain