Gene : PAH1 A. thaliana TAIR10
Primary Identifier:  ? AT3G09560 Defline:  (1 of 2) K15728 - phosphatidate phosphatase LPIN (LPIN)
Genomic Order:  909 Name:  ? AT3G09560
Secondary Identifier:  ? PAC:19662441
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana TRIGLSYN-PWY Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G09560 0.5kb upstream 0.5kb upstream 5340 true Chr3: 2934617-2939956 Arabidopsis thaliana
AT3G09560 0.5kb upstream 0.5kb upstream 500 false Chr3: 2939457-2939956 Arabidopsis thaliana
AT3G09560 0.5kb downstream 0.5kb downstream 5340 true Chr3: 2934117-2939456 Arabidopsis thaliana
AT3G09560 0.5kb downstream 0.5kb downstream 500 false Chr3: 2934117-2934616 Arabidopsis thaliana
AT3G09560 1.0kb upstream 1.0kb upstream 5840 true Chr3: 2934617-2940456 Arabidopsis thaliana
AT3G09560 1.0kb upstream 1.0kb upstream 1000 false Chr3: 2939457-2940456 Arabidopsis thaliana
AT3G09560 1.0kb downstream 1.0kb downstream 5840 true Chr3: 2933617-2939456 Arabidopsis thaliana
AT3G09560 1.0kb downstream 1.0kb downstream 1000 false Chr3: 2933617-2934616 Arabidopsis thaliana
AT3G09560 2.0kb upstream 2.0kb upstream 6840 true Chr3: 2934617-2941456 Arabidopsis thaliana
AT3G09560 2.0kb upstream 2.0kb upstream 2000 false Chr3: 2939457-2941456 Arabidopsis thaliana
AT3G09560 2.0kb downstream 2.0kb downstream 6840 true Chr3: 2932617-2939456 Arabidopsis thaliana
AT3G09560 2.0kb downstream 2.0kb downstream 2000 false Chr3: 2932617-2934616 Arabidopsis thaliana
AT3G09560 5.0kb upstream 5.0kb upstream 9840 true Chr3: 2934617-2944456 Arabidopsis thaliana
AT3G09560 5.0kb upstream 5.0kb upstream 5000 false Chr3: 2939457-2944456 Arabidopsis thaliana
AT3G09560 5.0kb downstream 5.0kb downstream 9840 true Chr3: 2929617-2939456 Arabidopsis thaliana
AT3G09560 5.0kb downstream 5.0kb downstream 5000 false Chr3: 2929617-2934616 Arabidopsis thaliana
AT3G09560 10.0kb upstream 10.0kb upstream 14840 true Chr3: 2934617-2949456 Arabidopsis thaliana
AT3G09560 10.0kb upstream 10.0kb upstream 10000 false Chr3: 2939457-2949456 Arabidopsis thaliana
AT3G09560 10.0kb downstream 10.0kb downstream 14840 true Chr3: 2924617-2939456 Arabidopsis thaliana
AT3G09560 10.0kb downstream 10.0kb downstream 10000 false Chr3: 2924617-2934616 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366067 5261 Brassicaceae View MSA
123839656 5264 Brassicales-Malvales View MSA
124322631 5266 SBM View MSA
124248073 5268 Malvidae View MSA
124065604 5270 Rosid View MSA
123741487 5271 Pentapetalae View MSA
122792824 5272 Eudicot View MSA
122048354 5273 Angiosperm View MSA
121350822 5274 Embryophyte View MSA
123381897 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.79        
cufflinks 2.23       Low
cufflinks 3.368        
cufflinks 2.855        
cufflinks 3.723       High
cufflinks 2.573        

0 Strain