Gene : AT3G11964 A. thaliana TAIR10
Defline:  (1 of 1) K14792 - rRNA biogenesis protein RRP5 (RRP5, PDCD11) Genomic Order:  1175
Name:  ? AT3G11964 Secondary Identifier:  ? PAC:19658542
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G11964 0.5kb upstream 0.5kb upstream 13170 true Chr3: 3793957-3807126 Arabidopsis thaliana
AT3G11964 0.5kb upstream 0.5kb upstream 500 false Chr3: 3806627-3807126 Arabidopsis thaliana
AT3G11964 0.5kb downstream 0.5kb downstream 13170 true Chr3: 3793457-3806626 Arabidopsis thaliana
AT3G11964 0.5kb downstream 0.5kb downstream 500 false Chr3: 3793457-3793956 Arabidopsis thaliana
AT3G11964 1.0kb upstream 1.0kb upstream 13670 true Chr3: 3793957-3807626 Arabidopsis thaliana
AT3G11964 1.0kb upstream 1.0kb upstream 1000 false Chr3: 3806627-3807626 Arabidopsis thaliana
AT3G11964 1.0kb downstream 1.0kb downstream 13670 true Chr3: 3792957-3806626 Arabidopsis thaliana
AT3G11964 1.0kb downstream 1.0kb downstream 1000 false Chr3: 3792957-3793956 Arabidopsis thaliana
AT3G11964 2.0kb upstream 2.0kb upstream 14670 true Chr3: 3793957-3808626 Arabidopsis thaliana
AT3G11964 2.0kb upstream 2.0kb upstream 2000 false Chr3: 3806627-3808626 Arabidopsis thaliana
AT3G11964 2.0kb downstream 2.0kb downstream 14670 true Chr3: 3791957-3806626 Arabidopsis thaliana
AT3G11964 2.0kb downstream 2.0kb downstream 2000 false Chr3: 3791957-3793956 Arabidopsis thaliana
AT3G11964 5.0kb upstream 5.0kb upstream 17670 true Chr3: 3793957-3811626 Arabidopsis thaliana
AT3G11964 5.0kb upstream 5.0kb upstream 5000 false Chr3: 3806627-3811626 Arabidopsis thaliana
AT3G11964 5.0kb downstream 5.0kb downstream 17670 true Chr3: 3788957-3806626 Arabidopsis thaliana
AT3G11964 5.0kb downstream 5.0kb downstream 5000 false Chr3: 3788957-3793956 Arabidopsis thaliana
AT3G11964 10.0kb upstream 10.0kb upstream 22670 true Chr3: 3793957-3816626 Arabidopsis thaliana
AT3G11964 10.0kb upstream 10.0kb upstream 10000 false Chr3: 3806627-3816626 Arabidopsis thaliana
AT3G11964 10.0kb downstream 10.0kb downstream 22670 true Chr3: 3783957-3806626 Arabidopsis thaliana
AT3G11964 10.0kb downstream 10.0kb downstream 10000 false Chr3: 3783957-3793956 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375746 5261 Brassicaceae View MSA
123829274 5264 Brassicales-Malvales View MSA
124342249 5266 SBM View MSA
124248037 5268 Malvidae View MSA
124068160 5270 Rosid View MSA
123740236 5271 Pentapetalae View MSA
122787572 5272 Eudicot View MSA
122045709 5273 Angiosperm View MSA
121346258 5274 Embryophyte View MSA
123424813 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.551        
cufflinks 8.624        
cufflinks 4.483        
cufflinks 9.386        
cufflinks 3.822       Low
cufflinks 10.544       High

0 Strain