Gene : AT3G03580 A. thaliana TAIR10
Defline:  (1 of 10) PF01535//PF13041//PF13812//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  292
Name:  ? AT3G03580 Secondary Identifier:  ? PAC:19659644
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G03580 0.5kb upstream 0.5kb upstream 3341 true Chr3: 860512-863852 Arabidopsis thaliana
AT3G03580 0.5kb upstream 0.5kb upstream 500 false Chr3: 863353-863852 Arabidopsis thaliana
AT3G03580 0.5kb downstream 0.5kb downstream 3341 true Chr3: 860012-863352 Arabidopsis thaliana
AT3G03580 0.5kb downstream 0.5kb downstream 500 false Chr3: 860012-860511 Arabidopsis thaliana
AT3G03580 1.0kb upstream 1.0kb upstream 3841 true Chr3: 860512-864352 Arabidopsis thaliana
AT3G03580 1.0kb upstream 1.0kb upstream 1000 false Chr3: 863353-864352 Arabidopsis thaliana
AT3G03580 1.0kb downstream 1.0kb downstream 3841 true Chr3: 859512-863352 Arabidopsis thaliana
AT3G03580 1.0kb downstream 1.0kb downstream 1000 false Chr3: 859512-860511 Arabidopsis thaliana
AT3G03580 2.0kb upstream 2.0kb upstream 4841 true Chr3: 860512-865352 Arabidopsis thaliana
AT3G03580 2.0kb upstream 2.0kb upstream 2000 false Chr3: 863353-865352 Arabidopsis thaliana
AT3G03580 2.0kb downstream 2.0kb downstream 4841 true Chr3: 858512-863352 Arabidopsis thaliana
AT3G03580 2.0kb downstream 2.0kb downstream 2000 false Chr3: 858512-860511 Arabidopsis thaliana
AT3G03580 5.0kb upstream 5.0kb upstream 7841 true Chr3: 860512-868352 Arabidopsis thaliana
AT3G03580 5.0kb upstream 5.0kb upstream 5000 false Chr3: 863353-868352 Arabidopsis thaliana
AT3G03580 5.0kb downstream 5.0kb downstream 7841 true Chr3: 855512-863352 Arabidopsis thaliana
AT3G03580 5.0kb downstream 5.0kb downstream 5000 false Chr3: 855512-860511 Arabidopsis thaliana
AT3G03580 10.0kb upstream 10.0kb upstream 12841 true Chr3: 860512-873352 Arabidopsis thaliana
AT3G03580 10.0kb upstream 10.0kb upstream 10000 false Chr3: 863353-873352 Arabidopsis thaliana
AT3G03580 10.0kb downstream 10.0kb downstream 12841 true Chr3: 850512-863352 Arabidopsis thaliana
AT3G03580 10.0kb downstream 10.0kb downstream 10000 false Chr3: 850512-860511 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377689 5261 Brassicaceae View MSA
123832440 5264 Brassicales-Malvales View MSA
124321799 5266 SBM View MSA
124244051 5268 Malvidae View MSA
124074740 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.397        
cufflinks 3.102        
cufflinks 1.511        
cufflinks 2.848        
cufflinks 1.232       Low
cufflinks 2.979        

0 Strain