Gene : SP1L3 A. thaliana TAIR10
Primary Identifier:  ? AT3G02180 Defline:  (1 of 2) PTHR33403:SF5 - PROTEIN SPIRAL1-LIKE 2-RELATED
Genomic Order:  141 Name:  ? AT3G02180
Secondary Identifier:  ? PAC:19658471
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G02180 0.5kb upstream 0.5kb upstream 1424 true Chr3: 404233-405656 Arabidopsis thaliana
AT3G02180 0.5kb upstream 0.5kb upstream 500 false Chr3: 404233-404732 Arabidopsis thaliana
AT3G02180 0.5kb downstream 0.5kb downstream 1424 true Chr3: 404733-406156 Arabidopsis thaliana
AT3G02180 0.5kb downstream 0.5kb downstream 500 false Chr3: 405657-406156 Arabidopsis thaliana
AT3G02180 1.0kb upstream 1.0kb upstream 1924 true Chr3: 403733-405656 Arabidopsis thaliana
AT3G02180 1.0kb upstream 1.0kb upstream 1000 false Chr3: 403733-404732 Arabidopsis thaliana
AT3G02180 1.0kb downstream 1.0kb downstream 1924 true Chr3: 404733-406656 Arabidopsis thaliana
AT3G02180 1.0kb downstream 1.0kb downstream 1000 false Chr3: 405657-406656 Arabidopsis thaliana
AT3G02180 2.0kb upstream 2.0kb upstream 2924 true Chr3: 402733-405656 Arabidopsis thaliana
AT3G02180 2.0kb upstream 2.0kb upstream 2000 false Chr3: 402733-404732 Arabidopsis thaliana
AT3G02180 2.0kb downstream 2.0kb downstream 2924 true Chr3: 404733-407656 Arabidopsis thaliana
AT3G02180 2.0kb downstream 2.0kb downstream 2000 false Chr3: 405657-407656 Arabidopsis thaliana
AT3G02180 5.0kb upstream 5.0kb upstream 5924 true Chr3: 399733-405656 Arabidopsis thaliana
AT3G02180 5.0kb upstream 5.0kb upstream 5000 false Chr3: 399733-404732 Arabidopsis thaliana
AT3G02180 5.0kb downstream 5.0kb downstream 5924 true Chr3: 404733-410656 Arabidopsis thaliana
AT3G02180 5.0kb downstream 5.0kb downstream 5000 false Chr3: 405657-410656 Arabidopsis thaliana
AT3G02180 10.0kb upstream 10.0kb upstream 10924 true Chr3: 394733-405656 Arabidopsis thaliana
AT3G02180 10.0kb upstream 10.0kb upstream 10000 false Chr3: 394733-404732 Arabidopsis thaliana
AT3G02180 10.0kb downstream 10.0kb downstream 10924 true Chr3: 404733-415656 Arabidopsis thaliana
AT3G02180 10.0kb downstream 10.0kb downstream 10000 false Chr3: 405657-415656 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376495 5261 Brassicaceae View MSA
123801268 5264 Brassicales-Malvales View MSA
124298591 5266 SBM View MSA
124253135 5268 Malvidae View MSA
124060662 5270 Rosid View MSA
123749851 5271 Pentapetalae View MSA
122787340 5272 Eudicot View MSA
122045105 5273 Angiosperm View MSA
121351504 5274 Embryophyte View MSA
123425662 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.201        
cufflinks 21.681        
cufflinks 16.061        
cufflinks 19.21        
cufflinks 14.581       Low
cufflinks 27.979       High

0 Strain