Gene : SEP2 A. thaliana TAIR10
Primary Identifier:  ? AT3G02310 Defline:  (1 of 3) PTHR11945//PTHR11945:SF196 - MADS BOX PROTEIN // SUBFAMILY NOT NAMED
Genomic Order:  155 Name:  ? AT3G02310
Secondary Identifier:  ? PAC:19661943
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G02310 0.5kb upstream 0.5kb upstream 3296 true Chr3: 464279-467574 Arabidopsis thaliana
AT3G02310 0.5kb upstream 0.5kb upstream 500 false Chr3: 467075-467574 Arabidopsis thaliana
AT3G02310 0.5kb downstream 0.5kb downstream 3296 true Chr3: 463779-467074 Arabidopsis thaliana
AT3G02310 0.5kb downstream 0.5kb downstream 500 false Chr3: 463779-464278 Arabidopsis thaliana
AT3G02310 1.0kb upstream 1.0kb upstream 3796 true Chr3: 464279-468074 Arabidopsis thaliana
AT3G02310 1.0kb upstream 1.0kb upstream 1000 false Chr3: 467075-468074 Arabidopsis thaliana
AT3G02310 1.0kb downstream 1.0kb downstream 3796 true Chr3: 463279-467074 Arabidopsis thaliana
AT3G02310 1.0kb downstream 1.0kb downstream 1000 false Chr3: 463279-464278 Arabidopsis thaliana
AT3G02310 2.0kb upstream 2.0kb upstream 4796 true Chr3: 464279-469074 Arabidopsis thaliana
AT3G02310 2.0kb upstream 2.0kb upstream 2000 false Chr3: 467075-469074 Arabidopsis thaliana
AT3G02310 2.0kb downstream 2.0kb downstream 4796 true Chr3: 462279-467074 Arabidopsis thaliana
AT3G02310 2.0kb downstream 2.0kb downstream 2000 false Chr3: 462279-464278 Arabidopsis thaliana
AT3G02310 5.0kb upstream 5.0kb upstream 7796 true Chr3: 464279-472074 Arabidopsis thaliana
AT3G02310 5.0kb upstream 5.0kb upstream 5000 false Chr3: 467075-472074 Arabidopsis thaliana
AT3G02310 5.0kb downstream 5.0kb downstream 7796 true Chr3: 459279-467074 Arabidopsis thaliana
AT3G02310 5.0kb downstream 5.0kb downstream 5000 false Chr3: 459279-464278 Arabidopsis thaliana
AT3G02310 10.0kb upstream 10.0kb upstream 12796 true Chr3: 464279-477074 Arabidopsis thaliana
AT3G02310 10.0kb upstream 10.0kb upstream 10000 false Chr3: 467075-477074 Arabidopsis thaliana
AT3G02310 10.0kb downstream 10.0kb downstream 12796 true Chr3: 454279-467074 Arabidopsis thaliana
AT3G02310 10.0kb downstream 10.0kb downstream 10000 false Chr3: 454279-464278 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376893 5261 Brassicaceae View MSA
123801386 5264 Brassicales-Malvales View MSA
124298696 5266 SBM View MSA
124249352 5268 Malvidae View MSA
124072265 5270 Rosid View MSA
123750627 5271 Pentapetalae View MSA
122793492 5272 Eudicot View MSA
122049609 5273 Angiosperm View MSA
121350957 5274 Embryophyte View MSA
123424057 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.456       High
cufflinks 0.011     Low  
cufflinks 0.101     Low  
cufflinks 0.014     Low  
cufflinks 0.239     Low  
cufflinks 0.012     Low  

0 Strain