Gene : CDC48C A. thaliana TAIR10
Primary Identifier:  ? AT3G01610 Defline:  (1 of 1) K14571 - ribosome biogenesis ATPase (RIX7, NVL)
Genomic Order:  81 Name:  ? AT3G01610
Secondary Identifier:  ? PAC:19665179
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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G01610 0.5kb upstream 0.5kb upstream 4064 true Chr3: 231151-235214 Arabidopsis thaliana
AT3G01610 0.5kb upstream 0.5kb upstream 500 false Chr3: 231151-231650 Arabidopsis thaliana
AT3G01610 0.5kb downstream 0.5kb downstream 4064 true Chr3: 231651-235714 Arabidopsis thaliana
AT3G01610 0.5kb downstream 0.5kb downstream 500 false Chr3: 235215-235714 Arabidopsis thaliana
AT3G01610 1.0kb upstream 1.0kb upstream 4564 true Chr3: 230651-235214 Arabidopsis thaliana
AT3G01610 1.0kb upstream 1.0kb upstream 1000 false Chr3: 230651-231650 Arabidopsis thaliana
AT3G01610 1.0kb downstream 1.0kb downstream 4564 true Chr3: 231651-236214 Arabidopsis thaliana
AT3G01610 1.0kb downstream 1.0kb downstream 1000 false Chr3: 235215-236214 Arabidopsis thaliana
AT3G01610 2.0kb upstream 2.0kb upstream 5564 true Chr3: 229651-235214 Arabidopsis thaliana
AT3G01610 2.0kb upstream 2.0kb upstream 2000 false Chr3: 229651-231650 Arabidopsis thaliana
AT3G01610 2.0kb downstream 2.0kb downstream 5564 true Chr3: 231651-237214 Arabidopsis thaliana
AT3G01610 2.0kb downstream 2.0kb downstream 2000 false Chr3: 235215-237214 Arabidopsis thaliana
AT3G01610 5.0kb upstream 5.0kb upstream 8564 true Chr3: 226651-235214 Arabidopsis thaliana
AT3G01610 5.0kb upstream 5.0kb upstream 5000 false Chr3: 226651-231650 Arabidopsis thaliana
AT3G01610 5.0kb downstream 5.0kb downstream 8564 true Chr3: 231651-240214 Arabidopsis thaliana
AT3G01610 5.0kb downstream 5.0kb downstream 5000 false Chr3: 235215-240214 Arabidopsis thaliana
AT3G01610 10.0kb upstream 10.0kb upstream 13564 true Chr3: 221651-235214 Arabidopsis thaliana
AT3G01610 10.0kb upstream 10.0kb upstream 10000 false Chr3: 221651-231650 Arabidopsis thaliana
AT3G01610 10.0kb downstream 10.0kb downstream 13564 true Chr3: 231651-245214 Arabidopsis thaliana
AT3G01610 10.0kb downstream 10.0kb downstream 10000 false Chr3: 235215-245214 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364855 5261 Brassicaceae View MSA
123833131 5264 Brassicales-Malvales View MSA
124340224 5266 SBM View MSA
124238285 5268 Malvidae View MSA
124062376 5270 Rosid View MSA
123741584 5271 Pentapetalae View MSA
122791851 5272 Eudicot View MSA
122045822 5273 Angiosperm View MSA
121351435 5274 Embryophyte View MSA
123426108 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.083        
cufflinks 9.414        
cufflinks 5.259       Low
cufflinks 8.926        
cufflinks 5.067       Low
cufflinks 10.228       High

0 Strain