Gene : SNL1 A. thaliana TAIR10
Primary Identifier:  ? AT3G01320 Defline:  (1 of 6) K11644 - paired amphipathic helix protein Sin3a (SIN3A)
Genomic Order:  37 Name:  ? AT3G01320
Secondary Identifier:  ? PAC:19658884
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G01320 0.5kb upstream 0.5kb upstream 7483 true Chr3: 106136-113618 Arabidopsis thaliana
AT3G01320 0.5kb upstream 0.5kb upstream 500 false Chr3: 106136-106635 Arabidopsis thaliana
AT3G01320 0.5kb downstream 0.5kb downstream 7483 true Chr3: 106636-114118 Arabidopsis thaliana
AT3G01320 0.5kb downstream 0.5kb downstream 500 false Chr3: 113619-114118 Arabidopsis thaliana
AT3G01320 1.0kb upstream 1.0kb upstream 7983 true Chr3: 105636-113618 Arabidopsis thaliana
AT3G01320 1.0kb upstream 1.0kb upstream 1000 false Chr3: 105636-106635 Arabidopsis thaliana
AT3G01320 1.0kb downstream 1.0kb downstream 7983 true Chr3: 106636-114618 Arabidopsis thaliana
AT3G01320 1.0kb downstream 1.0kb downstream 1000 false Chr3: 113619-114618 Arabidopsis thaliana
AT3G01320 2.0kb upstream 2.0kb upstream 8983 true Chr3: 104636-113618 Arabidopsis thaliana
AT3G01320 2.0kb upstream 2.0kb upstream 2000 false Chr3: 104636-106635 Arabidopsis thaliana
AT3G01320 2.0kb downstream 2.0kb downstream 8983 true Chr3: 106636-115618 Arabidopsis thaliana
AT3G01320 2.0kb downstream 2.0kb downstream 2000 false Chr3: 113619-115618 Arabidopsis thaliana
AT3G01320 5.0kb upstream 5.0kb upstream 11983 true Chr3: 101636-113618 Arabidopsis thaliana
AT3G01320 5.0kb upstream 5.0kb upstream 5000 false Chr3: 101636-106635 Arabidopsis thaliana
AT3G01320 5.0kb downstream 5.0kb downstream 11983 true Chr3: 106636-118618 Arabidopsis thaliana
AT3G01320 5.0kb downstream 5.0kb downstream 5000 false Chr3: 113619-118618 Arabidopsis thaliana
AT3G01320 10.0kb upstream 10.0kb upstream 16983 true Chr3: 96636-113618 Arabidopsis thaliana
AT3G01320 10.0kb upstream 10.0kb upstream 10000 false Chr3: 96636-106635 Arabidopsis thaliana
AT3G01320 10.0kb downstream 10.0kb downstream 16983 true Chr3: 106636-123618 Arabidopsis thaliana
AT3G01320 10.0kb downstream 10.0kb downstream 10000 false Chr3: 113619-123618 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375094 5261 Brassicaceae View MSA
123839182 5264 Brassicales-Malvales View MSA
124351149 5266 SBM View MSA
124237292 5268 Malvidae View MSA
124072493 5270 Rosid View MSA
123752813 5271 Pentapetalae View MSA
122791038 5272 Eudicot View MSA
122047034 5273 Angiosperm View MSA
121346152 5274 Embryophyte View MSA
123428507 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.179        
cufflinks 6.624        
cufflinks 3.832       Low
cufflinks 6.976       High
cufflinks 4.433        
cufflinks 5.608        

0 Strain