Gene : AT3G50050 A. thaliana TAIR10
Defline:  (1 of 2) PTHR13683//PTHR13683:SF342 - ASPARTYL PROTEASES // SUBFAMILY NOT NAMED Genomic Order:  4011
Name:  ? AT3G50050 Secondary Identifier:  ? PAC:19659584
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G50050 0.5kb upstream 0.5kb upstream 3726 true Chr3: 18553984-18557709 Arabidopsis thaliana
AT3G50050 0.5kb upstream 0.5kb upstream 500 false Chr3: 18557210-18557709 Arabidopsis thaliana
AT3G50050 0.5kb downstream 0.5kb downstream 3726 true Chr3: 18553484-18557209 Arabidopsis thaliana
AT3G50050 0.5kb downstream 0.5kb downstream 500 false Chr3: 18553484-18553983 Arabidopsis thaliana
AT3G50050 1.0kb upstream 1.0kb upstream 4226 true Chr3: 18553984-18558209 Arabidopsis thaliana
AT3G50050 1.0kb upstream 1.0kb upstream 1000 false Chr3: 18557210-18558209 Arabidopsis thaliana
AT3G50050 1.0kb downstream 1.0kb downstream 4226 true Chr3: 18552984-18557209 Arabidopsis thaliana
AT3G50050 1.0kb downstream 1.0kb downstream 1000 false Chr3: 18552984-18553983 Arabidopsis thaliana
AT3G50050 2.0kb upstream 2.0kb upstream 5226 true Chr3: 18553984-18559209 Arabidopsis thaliana
AT3G50050 2.0kb upstream 2.0kb upstream 2000 false Chr3: 18557210-18559209 Arabidopsis thaliana
AT3G50050 2.0kb downstream 2.0kb downstream 5226 true Chr3: 18551984-18557209 Arabidopsis thaliana
AT3G50050 2.0kb downstream 2.0kb downstream 2000 false Chr3: 18551984-18553983 Arabidopsis thaliana
AT3G50050 5.0kb upstream 5.0kb upstream 8226 true Chr3: 18553984-18562209 Arabidopsis thaliana
AT3G50050 5.0kb upstream 5.0kb upstream 5000 false Chr3: 18557210-18562209 Arabidopsis thaliana
AT3G50050 5.0kb downstream 5.0kb downstream 8226 true Chr3: 18548984-18557209 Arabidopsis thaliana
AT3G50050 5.0kb downstream 5.0kb downstream 5000 false Chr3: 18548984-18553983 Arabidopsis thaliana
AT3G50050 10.0kb upstream 10.0kb upstream 13226 true Chr3: 18553984-18567209 Arabidopsis thaliana
AT3G50050 10.0kb upstream 10.0kb upstream 10000 false Chr3: 18557210-18567209 Arabidopsis thaliana
AT3G50050 10.0kb downstream 10.0kb downstream 13226 true Chr3: 18543984-18557209 Arabidopsis thaliana
AT3G50050 10.0kb downstream 10.0kb downstream 10000 false Chr3: 18543984-18553983 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367489 5261 Brassicaceae View MSA
123828024 5264 Brassicales-Malvales View MSA
124347964 5266 SBM View MSA
124245279 5268 Malvidae View MSA
124072520 5270 Rosid View MSA
123741714 5271 Pentapetalae View MSA
122786782 5272 Eudicot View MSA
122041856 5273 Angiosperm View MSA
121346441 5274 Embryophyte View MSA
123428674 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.856        
cufflinks 7.133        
cufflinks 2.37        
cufflinks 6.769        
cufflinks 2.239       Low
cufflinks 7.511        

0 Strain