Gene : AT3G20230 A. thaliana TAIR10
Defline:  (1 of 1) PTHR12899//PTHR12899:SF7 - 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL // SUBFAMILY NOT NAMED Genomic Order:  2102
Name:  ? AT3G20230 Secondary Identifier:  ? PAC:19663972
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G20230 0.5kb upstream 0.5kb upstream 1906 true Chr3: 7055353-7057258 Arabidopsis thaliana
AT3G20230 0.5kb upstream 0.5kb upstream 500 false Chr3: 7056759-7057258 Arabidopsis thaliana
AT3G20230 0.5kb downstream 0.5kb downstream 1906 true Chr3: 7054853-7056758 Arabidopsis thaliana
AT3G20230 0.5kb downstream 0.5kb downstream 500 false Chr3: 7054853-7055352 Arabidopsis thaliana
AT3G20230 1.0kb upstream 1.0kb upstream 2406 true Chr3: 7055353-7057758 Arabidopsis thaliana
AT3G20230 1.0kb upstream 1.0kb upstream 1000 false Chr3: 7056759-7057758 Arabidopsis thaliana
AT3G20230 1.0kb downstream 1.0kb downstream 2406 true Chr3: 7054353-7056758 Arabidopsis thaliana
AT3G20230 1.0kb downstream 1.0kb downstream 1000 false Chr3: 7054353-7055352 Arabidopsis thaliana
AT3G20230 2.0kb upstream 2.0kb upstream 3406 true Chr3: 7055353-7058758 Arabidopsis thaliana
AT3G20230 2.0kb upstream 2.0kb upstream 2000 false Chr3: 7056759-7058758 Arabidopsis thaliana
AT3G20230 2.0kb downstream 2.0kb downstream 3406 true Chr3: 7053353-7056758 Arabidopsis thaliana
AT3G20230 2.0kb downstream 2.0kb downstream 2000 false Chr3: 7053353-7055352 Arabidopsis thaliana
AT3G20230 5.0kb upstream 5.0kb upstream 6406 true Chr3: 7055353-7061758 Arabidopsis thaliana
AT3G20230 5.0kb upstream 5.0kb upstream 5000 false Chr3: 7056759-7061758 Arabidopsis thaliana
AT3G20230 5.0kb downstream 5.0kb downstream 6406 true Chr3: 7050353-7056758 Arabidopsis thaliana
AT3G20230 5.0kb downstream 5.0kb downstream 5000 false Chr3: 7050353-7055352 Arabidopsis thaliana
AT3G20230 10.0kb upstream 10.0kb upstream 11406 true Chr3: 7055353-7066758 Arabidopsis thaliana
AT3G20230 10.0kb upstream 10.0kb upstream 10000 false Chr3: 7056759-7066758 Arabidopsis thaliana
AT3G20230 10.0kb downstream 10.0kb downstream 11406 true Chr3: 7045353-7056758 Arabidopsis thaliana
AT3G20230 10.0kb downstream 10.0kb downstream 10000 false Chr3: 7045353-7055352 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372704 5261 Brassicaceae View MSA
123831688 5264 Brassicales-Malvales View MSA
124341899 5266 SBM View MSA
124242882 5268 Malvidae View MSA
124062094 5270 Rosid View MSA
123739656 5271 Pentapetalae View MSA
122787801 5272 Eudicot View MSA
122044038 5273 Angiosperm View MSA
121345131 5274 Embryophyte View MSA
123428536 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 52.792     High  
cufflinks 12.256        
cufflinks 62.592     High High
cufflinks 11.716        
cufflinks 43.714     High  
cufflinks 8.754       Low

0 Strain