Gene : AT3G48380 A. thaliana TAIR10
Defline:  (1 of 2) PTHR24375//PTHR24375:SF183 - FAMILY NOT NAMED // C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN Genomic Order:  3832
Name:  ? AT3G48380 Secondary Identifier:  ? PAC:19660385
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G48380 0.5kb upstream 0.5kb upstream 4322 true Chr3: 17915916-17920237 Arabidopsis thaliana
AT3G48380 0.5kb upstream 0.5kb upstream 500 false Chr3: 17915916-17916415 Arabidopsis thaliana
AT3G48380 0.5kb downstream 0.5kb downstream 4322 true Chr3: 17916416-17920737 Arabidopsis thaliana
AT3G48380 0.5kb downstream 0.5kb downstream 500 false Chr3: 17920238-17920737 Arabidopsis thaliana
AT3G48380 1.0kb upstream 1.0kb upstream 4822 true Chr3: 17915416-17920237 Arabidopsis thaliana
AT3G48380 1.0kb upstream 1.0kb upstream 1000 false Chr3: 17915416-17916415 Arabidopsis thaliana
AT3G48380 1.0kb downstream 1.0kb downstream 4822 true Chr3: 17916416-17921237 Arabidopsis thaliana
AT3G48380 1.0kb downstream 1.0kb downstream 1000 false Chr3: 17920238-17921237 Arabidopsis thaliana
AT3G48380 2.0kb upstream 2.0kb upstream 5822 true Chr3: 17914416-17920237 Arabidopsis thaliana
AT3G48380 2.0kb upstream 2.0kb upstream 2000 false Chr3: 17914416-17916415 Arabidopsis thaliana
AT3G48380 2.0kb downstream 2.0kb downstream 5822 true Chr3: 17916416-17922237 Arabidopsis thaliana
AT3G48380 2.0kb downstream 2.0kb downstream 2000 false Chr3: 17920238-17922237 Arabidopsis thaliana
AT3G48380 5.0kb upstream 5.0kb upstream 8822 true Chr3: 17911416-17920237 Arabidopsis thaliana
AT3G48380 5.0kb upstream 5.0kb upstream 5000 false Chr3: 17911416-17916415 Arabidopsis thaliana
AT3G48380 5.0kb downstream 5.0kb downstream 8822 true Chr3: 17916416-17925237 Arabidopsis thaliana
AT3G48380 5.0kb downstream 5.0kb downstream 5000 false Chr3: 17920238-17925237 Arabidopsis thaliana
AT3G48380 10.0kb upstream 10.0kb upstream 13822 true Chr3: 17906416-17920237 Arabidopsis thaliana
AT3G48380 10.0kb upstream 10.0kb upstream 10000 false Chr3: 17906416-17916415 Arabidopsis thaliana
AT3G48380 10.0kb downstream 10.0kb downstream 13822 true Chr3: 17916416-17930237 Arabidopsis thaliana
AT3G48380 10.0kb downstream 10.0kb downstream 10000 false Chr3: 17920238-17930237 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363447 5261 Brassicaceae View MSA
123833995 5264 Brassicales-Malvales View MSA
124343483 5266 SBM View MSA
124240370 5268 Malvidae View MSA
124068344 5270 Rosid View MSA
123747226 5271 Pentapetalae View MSA
122792023 5272 Eudicot View MSA
122041636 5273 Angiosperm View MSA
121345682 5274 Embryophyte View MSA
123425510 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.52        
cufflinks 5.562       High
cufflinks 2.625       Low
cufflinks 5.638       High
cufflinks 3.063        
cufflinks 4.494        

0 Strain