Gene : UBP26 A. thaliana TAIR10
Primary Identifier:  ? AT3G49600 Defline:  (1 of 1) K11858 - ubiquitin carboxyl-terminal hydrolase 48 [EC:3.4.19.12] (USP48)
Genomic Order:  3959 Name:  ? AT3G49600
Secondary Identifier:  ? PAC:19659835
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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G49600 0.5kb upstream 0.5kb upstream 7080 true Chr3: 18380549-18387628 Arabidopsis thaliana
AT3G49600 0.5kb upstream 0.5kb upstream 500 false Chr3: 18387129-18387628 Arabidopsis thaliana
AT3G49600 0.5kb downstream 0.5kb downstream 7080 true Chr3: 18380049-18387128 Arabidopsis thaliana
AT3G49600 0.5kb downstream 0.5kb downstream 500 false Chr3: 18380049-18380548 Arabidopsis thaliana
AT3G49600 1.0kb upstream 1.0kb upstream 7580 true Chr3: 18380549-18388128 Arabidopsis thaliana
AT3G49600 1.0kb upstream 1.0kb upstream 1000 false Chr3: 18387129-18388128 Arabidopsis thaliana
AT3G49600 1.0kb downstream 1.0kb downstream 7580 true Chr3: 18379549-18387128 Arabidopsis thaliana
AT3G49600 1.0kb downstream 1.0kb downstream 1000 false Chr3: 18379549-18380548 Arabidopsis thaliana
AT3G49600 2.0kb upstream 2.0kb upstream 8580 true Chr3: 18380549-18389128 Arabidopsis thaliana
AT3G49600 2.0kb upstream 2.0kb upstream 2000 false Chr3: 18387129-18389128 Arabidopsis thaliana
AT3G49600 2.0kb downstream 2.0kb downstream 8580 true Chr3: 18378549-18387128 Arabidopsis thaliana
AT3G49600 2.0kb downstream 2.0kb downstream 2000 false Chr3: 18378549-18380548 Arabidopsis thaliana
AT3G49600 5.0kb upstream 5.0kb upstream 11580 true Chr3: 18380549-18392128 Arabidopsis thaliana
AT3G49600 5.0kb upstream 5.0kb upstream 5000 false Chr3: 18387129-18392128 Arabidopsis thaliana
AT3G49600 5.0kb downstream 5.0kb downstream 11580 true Chr3: 18375549-18387128 Arabidopsis thaliana
AT3G49600 5.0kb downstream 5.0kb downstream 5000 false Chr3: 18375549-18380548 Arabidopsis thaliana
AT3G49600 10.0kb upstream 10.0kb upstream 16580 true Chr3: 18380549-18397128 Arabidopsis thaliana
AT3G49600 10.0kb upstream 10.0kb upstream 10000 false Chr3: 18387129-18397128 Arabidopsis thaliana
AT3G49600 10.0kb downstream 10.0kb downstream 16580 true Chr3: 18370549-18387128 Arabidopsis thaliana
AT3G49600 10.0kb downstream 10.0kb downstream 10000 false Chr3: 18370549-18380548 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372614 5261 Brassicaceae View MSA
123831046 5264 Brassicales-Malvales View MSA
124342030 5266 SBM View MSA
124243585 5268 Malvidae View MSA
124061105 5270 Rosid View MSA
123737651 5271 Pentapetalae View MSA
122791193 5272 Eudicot View MSA
122043849 5273 Angiosperm View MSA
121347383 5274 Embryophyte View MSA
123427406 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.324        
cufflinks 5.493        
cufflinks 3.241       Low
cufflinks 5.64        
cufflinks 2.919       Low
cufflinks 5.728        

0 Strain