Gene : AT3G25680 A. thaliana TAIR10
Defline:  (1 of 2) PF00395 - S-layer homology domain (SLH) Genomic Order:  2696
Name:  ? AT3G25680 Secondary Identifier:  ? PAC:19664105
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G25680 0.5kb upstream 0.5kb upstream 3316 true Chr3: 9349112-9352427 Arabidopsis thaliana
AT3G25680 0.5kb upstream 0.5kb upstream 500 false Chr3: 9349112-9349611 Arabidopsis thaliana
AT3G25680 0.5kb downstream 0.5kb downstream 3316 true Chr3: 9349612-9352927 Arabidopsis thaliana
AT3G25680 0.5kb downstream 0.5kb downstream 500 false Chr3: 9352428-9352927 Arabidopsis thaliana
AT3G25680 1.0kb upstream 1.0kb upstream 3816 true Chr3: 9348612-9352427 Arabidopsis thaliana
AT3G25680 1.0kb upstream 1.0kb upstream 1000 false Chr3: 9348612-9349611 Arabidopsis thaliana
AT3G25680 1.0kb downstream 1.0kb downstream 3816 true Chr3: 9349612-9353427 Arabidopsis thaliana
AT3G25680 1.0kb downstream 1.0kb downstream 1000 false Chr3: 9352428-9353427 Arabidopsis thaliana
AT3G25680 2.0kb upstream 2.0kb upstream 4816 true Chr3: 9347612-9352427 Arabidopsis thaliana
AT3G25680 2.0kb upstream 2.0kb upstream 2000 false Chr3: 9347612-9349611 Arabidopsis thaliana
AT3G25680 2.0kb downstream 2.0kb downstream 4816 true Chr3: 9349612-9354427 Arabidopsis thaliana
AT3G25680 2.0kb downstream 2.0kb downstream 2000 false Chr3: 9352428-9354427 Arabidopsis thaliana
AT3G25680 5.0kb upstream 5.0kb upstream 7816 true Chr3: 9344612-9352427 Arabidopsis thaliana
AT3G25680 5.0kb upstream 5.0kb upstream 5000 false Chr3: 9344612-9349611 Arabidopsis thaliana
AT3G25680 5.0kb downstream 5.0kb downstream 7816 true Chr3: 9349612-9357427 Arabidopsis thaliana
AT3G25680 5.0kb downstream 5.0kb downstream 5000 false Chr3: 9352428-9357427 Arabidopsis thaliana
AT3G25680 10.0kb upstream 10.0kb upstream 12816 true Chr3: 9339612-9352427 Arabidopsis thaliana
AT3G25680 10.0kb upstream 10.0kb upstream 10000 false Chr3: 9339612-9349611 Arabidopsis thaliana
AT3G25680 10.0kb downstream 10.0kb downstream 12816 true Chr3: 9349612-9362427 Arabidopsis thaliana
AT3G25680 10.0kb downstream 10.0kb downstream 10000 false Chr3: 9352428-9362427 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041383 5273 Angiosperm View MSA
122370865 5261 Brassicaceae View MSA
123828970 5264 Brassicales-Malvales View MSA
124339584 5266 SBM View MSA
124237285 5268 Malvidae View MSA
124066424 5270 Rosid View MSA
123737499 5271 Pentapetalae View MSA
122793809 5272 Eudicot View MSA
121350545 5274 Embryophyte View MSA
123381784 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.014        
cufflinks 7.16        
cufflinks 8.605       High
cufflinks 5.913       Low
cufflinks 6.772        
cufflinks 6.395        

0 Strain