Gene : ATL5 A. thaliana TAIR10
Primary Identifier:  ? AT3G25520 Defline:  (1 of 2) K02932 - large subunit ribosomal protein L5e (RP-L5e, RPL5)
Genomic Order:  2674 Name:  ? AT3G25520
Secondary Identifier:  ? PAC:19659663
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Genomics

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Expression

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4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G25520 0.5kb upstream 0.5kb upstream 2608 true Chr3: 9269293-9271900 Arabidopsis thaliana
AT3G25520 0.5kb upstream 0.5kb upstream 500 false Chr3: 9271401-9271900 Arabidopsis thaliana
AT3G25520 0.5kb downstream 0.5kb downstream 2608 true Chr3: 9268793-9271400 Arabidopsis thaliana
AT3G25520 0.5kb downstream 0.5kb downstream 500 false Chr3: 9268793-9269292 Arabidopsis thaliana
AT3G25520 1.0kb upstream 1.0kb upstream 3108 true Chr3: 9269293-9272400 Arabidopsis thaliana
AT3G25520 1.0kb upstream 1.0kb upstream 1000 false Chr3: 9271401-9272400 Arabidopsis thaliana
AT3G25520 1.0kb downstream 1.0kb downstream 3108 true Chr3: 9268293-9271400 Arabidopsis thaliana
AT3G25520 1.0kb downstream 1.0kb downstream 1000 false Chr3: 9268293-9269292 Arabidopsis thaliana
AT3G25520 2.0kb upstream 2.0kb upstream 4108 true Chr3: 9269293-9273400 Arabidopsis thaliana
AT3G25520 2.0kb upstream 2.0kb upstream 2000 false Chr3: 9271401-9273400 Arabidopsis thaliana
AT3G25520 2.0kb downstream 2.0kb downstream 4108 true Chr3: 9267293-9271400 Arabidopsis thaliana
AT3G25520 2.0kb downstream 2.0kb downstream 2000 false Chr3: 9267293-9269292 Arabidopsis thaliana
AT3G25520 5.0kb upstream 5.0kb upstream 7108 true Chr3: 9269293-9276400 Arabidopsis thaliana
AT3G25520 5.0kb upstream 5.0kb upstream 5000 false Chr3: 9271401-9276400 Arabidopsis thaliana
AT3G25520 5.0kb downstream 5.0kb downstream 7108 true Chr3: 9264293-9271400 Arabidopsis thaliana
AT3G25520 5.0kb downstream 5.0kb downstream 5000 false Chr3: 9264293-9269292 Arabidopsis thaliana
AT3G25520 10.0kb upstream 10.0kb upstream 12108 true Chr3: 9269293-9281400 Arabidopsis thaliana
AT3G25520 10.0kb upstream 10.0kb upstream 10000 false Chr3: 9271401-9281400 Arabidopsis thaliana
AT3G25520 10.0kb downstream 10.0kb downstream 12108 true Chr3: 9259293-9271400 Arabidopsis thaliana
AT3G25520 10.0kb downstream 10.0kb downstream 10000 false Chr3: 9259293-9269292 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380335 5261 Brassicaceae View MSA
123831832 5264 Brassicales-Malvales View MSA
124349835 5266 SBM View MSA
124252633 5268 Malvidae View MSA
124061233 5270 Rosid View MSA
123751479 5271 Pentapetalae View MSA
122787634 5272 Eudicot View MSA
122045073 5273 Angiosperm View MSA
121347703 5274 Embryophyte View MSA
123424766 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 113.17     High  
cufflinks 141.698     High  
cufflinks 102.092     High  
cufflinks 149.241     High  
cufflinks 79.888     High Low
cufflinks 163.971     High High

0 Strain