Gene : AT3G25470 A. thaliana TAIR10
Defline:  (1 of 1) 2.1.1.226//2.1.1.227 - 23S rRNA (cytidine(1920)-2'-O)-methyltransferase // 16S rRNA (cytidine(1409)-2'-O)-methyltransferase Genomic Order:  2669
Name:  ? AT3G25470 Secondary Identifier:  ? PAC:19662177
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G25470 0.5kb upstream 0.5kb upstream 2795 true Chr3: 9232419-9235213 Arabidopsis thaliana
AT3G25470 0.5kb upstream 0.5kb upstream 500 false Chr3: 9232419-9232918 Arabidopsis thaliana
AT3G25470 0.5kb downstream 0.5kb downstream 2795 true Chr3: 9232919-9235713 Arabidopsis thaliana
AT3G25470 0.5kb downstream 0.5kb downstream 500 false Chr3: 9235214-9235713 Arabidopsis thaliana
AT3G25470 1.0kb upstream 1.0kb upstream 3295 true Chr3: 9231919-9235213 Arabidopsis thaliana
AT3G25470 1.0kb upstream 1.0kb upstream 1000 false Chr3: 9231919-9232918 Arabidopsis thaliana
AT3G25470 1.0kb downstream 1.0kb downstream 3295 true Chr3: 9232919-9236213 Arabidopsis thaliana
AT3G25470 1.0kb downstream 1.0kb downstream 1000 false Chr3: 9235214-9236213 Arabidopsis thaliana
AT3G25470 2.0kb upstream 2.0kb upstream 4295 true Chr3: 9230919-9235213 Arabidopsis thaliana
AT3G25470 2.0kb upstream 2.0kb upstream 2000 false Chr3: 9230919-9232918 Arabidopsis thaliana
AT3G25470 2.0kb downstream 2.0kb downstream 4295 true Chr3: 9232919-9237213 Arabidopsis thaliana
AT3G25470 2.0kb downstream 2.0kb downstream 2000 false Chr3: 9235214-9237213 Arabidopsis thaliana
AT3G25470 5.0kb upstream 5.0kb upstream 7295 true Chr3: 9227919-9235213 Arabidopsis thaliana
AT3G25470 5.0kb upstream 5.0kb upstream 5000 false Chr3: 9227919-9232918 Arabidopsis thaliana
AT3G25470 5.0kb downstream 5.0kb downstream 7295 true Chr3: 9232919-9240213 Arabidopsis thaliana
AT3G25470 5.0kb downstream 5.0kb downstream 5000 false Chr3: 9235214-9240213 Arabidopsis thaliana
AT3G25470 10.0kb upstream 10.0kb upstream 12295 true Chr3: 9222919-9235213 Arabidopsis thaliana
AT3G25470 10.0kb upstream 10.0kb upstream 10000 false Chr3: 9222919-9232918 Arabidopsis thaliana
AT3G25470 10.0kb downstream 10.0kb downstream 12295 true Chr3: 9232919-9245213 Arabidopsis thaliana
AT3G25470 10.0kb downstream 10.0kb downstream 10000 false Chr3: 9235214-9245213 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371094 5261 Brassicaceae View MSA
123832094 5264 Brassicales-Malvales View MSA
124341535 5266 SBM View MSA
124237526 5268 Malvidae View MSA
124068570 5270 Rosid View MSA
123739916 5271 Pentapetalae View MSA
122785847 5272 Eudicot View MSA
122047844 5273 Angiosperm View MSA
121347499 5274 Embryophyte View MSA
123424173 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 32.213     High  
cufflinks 16.094        
cufflinks 35.655     High High
cufflinks 15.96        
cufflinks 31.1     High  
cufflinks 15.427        

0 Strain