Gene : NCED6 A. thaliana TAIR10
Primary Identifier:  ? AT3G24220 Defline:  (1 of 1) PTHR10543//PTHR10543:SF48 - BETA-CAROTENE DIOXYGENASE // 9-CIS-EPOXYCAROTENOID DIOXYGENASE NCED6, CHLOROPLASTIC
Genomic Order:  2548 Name:  ? AT3G24220
Secondary Identifier:  ? PAC:19662291
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-695 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G24220 0.5kb upstream 0.5kb upstream 2239 true Chr3: 8760934-8763172 Arabidopsis thaliana
AT3G24220 0.5kb upstream 0.5kb upstream 500 false Chr3: 8760934-8761433 Arabidopsis thaliana
AT3G24220 0.5kb downstream 0.5kb downstream 2239 true Chr3: 8761434-8763672 Arabidopsis thaliana
AT3G24220 0.5kb downstream 0.5kb downstream 500 false Chr3: 8763173-8763672 Arabidopsis thaliana
AT3G24220 1.0kb upstream 1.0kb upstream 2739 true Chr3: 8760434-8763172 Arabidopsis thaliana
AT3G24220 1.0kb upstream 1.0kb upstream 1000 false Chr3: 8760434-8761433 Arabidopsis thaliana
AT3G24220 1.0kb downstream 1.0kb downstream 2739 true Chr3: 8761434-8764172 Arabidopsis thaliana
AT3G24220 1.0kb downstream 1.0kb downstream 1000 false Chr3: 8763173-8764172 Arabidopsis thaliana
AT3G24220 2.0kb upstream 2.0kb upstream 3739 true Chr3: 8759434-8763172 Arabidopsis thaliana
AT3G24220 2.0kb upstream 2.0kb upstream 2000 false Chr3: 8759434-8761433 Arabidopsis thaliana
AT3G24220 2.0kb downstream 2.0kb downstream 3739 true Chr3: 8761434-8765172 Arabidopsis thaliana
AT3G24220 2.0kb downstream 2.0kb downstream 2000 false Chr3: 8763173-8765172 Arabidopsis thaliana
AT3G24220 5.0kb upstream 5.0kb upstream 6739 true Chr3: 8756434-8763172 Arabidopsis thaliana
AT3G24220 5.0kb upstream 5.0kb upstream 5000 false Chr3: 8756434-8761433 Arabidopsis thaliana
AT3G24220 5.0kb downstream 5.0kb downstream 6739 true Chr3: 8761434-8768172 Arabidopsis thaliana
AT3G24220 5.0kb downstream 5.0kb downstream 5000 false Chr3: 8763173-8768172 Arabidopsis thaliana
AT3G24220 10.0kb upstream 10.0kb upstream 11739 true Chr3: 8751434-8763172 Arabidopsis thaliana
AT3G24220 10.0kb upstream 10.0kb upstream 10000 false Chr3: 8751434-8761433 Arabidopsis thaliana
AT3G24220 10.0kb downstream 10.0kb downstream 11739 true Chr3: 8761434-8773172 Arabidopsis thaliana
AT3G24220 10.0kb downstream 10.0kb downstream 10000 false Chr3: 8763173-8773172 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368951 5261 Brassicaceae View MSA
123833807 5264 Brassicales-Malvales View MSA
124344932 5266 SBM View MSA
124242947 5268 Malvidae View MSA
124068526 5270 Rosid View MSA
123741505 5271 Pentapetalae View MSA
122796781 5272 Eudicot View MSA
122050852 5273 Angiosperm View MSA
121350265 5274 Embryophyte View MSA
123428777 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.009     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain