Gene : BLI A. thaliana TAIR10
Primary Identifier:  ? AT3G23980 Defline:  (1 of 1) PTHR19306//PTHR19306:SF4 - STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 // GENOMIC DNA, CHROMOSOME 3, BAC CLONE:F14O13
Genomic Order:  2520 Name:  ? AT3G23980
Secondary Identifier:  ? PAC:19664378
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G23980 0.5kb upstream 0.5kb upstream 5820 true Chr3: 8662433-8668252 Arabidopsis thaliana
AT3G23980 0.5kb upstream 0.5kb upstream 500 false Chr3: 8667753-8668252 Arabidopsis thaliana
AT3G23980 0.5kb downstream 0.5kb downstream 5820 true Chr3: 8661933-8667752 Arabidopsis thaliana
AT3G23980 0.5kb downstream 0.5kb downstream 500 false Chr3: 8661933-8662432 Arabidopsis thaliana
AT3G23980 1.0kb upstream 1.0kb upstream 6320 true Chr3: 8662433-8668752 Arabidopsis thaliana
AT3G23980 1.0kb upstream 1.0kb upstream 1000 false Chr3: 8667753-8668752 Arabidopsis thaliana
AT3G23980 1.0kb downstream 1.0kb downstream 6320 true Chr3: 8661433-8667752 Arabidopsis thaliana
AT3G23980 1.0kb downstream 1.0kb downstream 1000 false Chr3: 8661433-8662432 Arabidopsis thaliana
AT3G23980 2.0kb upstream 2.0kb upstream 7320 true Chr3: 8662433-8669752 Arabidopsis thaliana
AT3G23980 2.0kb upstream 2.0kb upstream 2000 false Chr3: 8667753-8669752 Arabidopsis thaliana
AT3G23980 2.0kb downstream 2.0kb downstream 7320 true Chr3: 8660433-8667752 Arabidopsis thaliana
AT3G23980 2.0kb downstream 2.0kb downstream 2000 false Chr3: 8660433-8662432 Arabidopsis thaliana
AT3G23980 5.0kb upstream 5.0kb upstream 10320 true Chr3: 8662433-8672752 Arabidopsis thaliana
AT3G23980 5.0kb upstream 5.0kb upstream 5000 false Chr3: 8667753-8672752 Arabidopsis thaliana
AT3G23980 5.0kb downstream 5.0kb downstream 10320 true Chr3: 8657433-8667752 Arabidopsis thaliana
AT3G23980 5.0kb downstream 5.0kb downstream 5000 false Chr3: 8657433-8662432 Arabidopsis thaliana
AT3G23980 10.0kb upstream 10.0kb upstream 15320 true Chr3: 8662433-8677752 Arabidopsis thaliana
AT3G23980 10.0kb upstream 10.0kb upstream 10000 false Chr3: 8667753-8677752 Arabidopsis thaliana
AT3G23980 10.0kb downstream 10.0kb downstream 15320 true Chr3: 8652433-8667752 Arabidopsis thaliana
AT3G23980 10.0kb downstream 10.0kb downstream 10000 false Chr3: 8652433-8662432 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373970 5261 Brassicaceae View MSA
123835262 5264 Brassicales-Malvales View MSA
124342558 5266 SBM View MSA
124244095 5268 Malvidae View MSA
124066833 5270 Rosid View MSA
123743772 5271 Pentapetalae View MSA
122789162 5272 Eudicot View MSA
122046769 5273 Angiosperm View MSA
121349344 5274 Embryophyte View MSA
123425955 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.371        
cufflinks 15.145        
cufflinks 8.585       Low
cufflinks 15.181        
cufflinks 8.673       Low
cufflinks 15.547        

0 Strain