Gene : HSP60 A. thaliana TAIR10
Primary Identifier:  ? AT3G23990 Defline:  (1 of 2) PTHR11353//PTHR11353:SF80 - CHAPERONIN // SUBFAMILY NOT NAMED
Genomic Order:  2521 Name:  ? AT3G23990
Secondary Identifier:  ? PAC:19663432
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G23990 0.5kb upstream 0.5kb upstream 4161 true Chr3: 8668418-8672578 Arabidopsis thaliana
AT3G23990 0.5kb upstream 0.5kb upstream 500 false Chr3: 8668418-8668917 Arabidopsis thaliana
AT3G23990 0.5kb downstream 0.5kb downstream 4161 true Chr3: 8668918-8673078 Arabidopsis thaliana
AT3G23990 0.5kb downstream 0.5kb downstream 500 false Chr3: 8672579-8673078 Arabidopsis thaliana
AT3G23990 1.0kb upstream 1.0kb upstream 4661 true Chr3: 8667918-8672578 Arabidopsis thaliana
AT3G23990 1.0kb upstream 1.0kb upstream 1000 false Chr3: 8667918-8668917 Arabidopsis thaliana
AT3G23990 1.0kb downstream 1.0kb downstream 4661 true Chr3: 8668918-8673578 Arabidopsis thaliana
AT3G23990 1.0kb downstream 1.0kb downstream 1000 false Chr3: 8672579-8673578 Arabidopsis thaliana
AT3G23990 2.0kb upstream 2.0kb upstream 5661 true Chr3: 8666918-8672578 Arabidopsis thaliana
AT3G23990 2.0kb upstream 2.0kb upstream 2000 false Chr3: 8666918-8668917 Arabidopsis thaliana
AT3G23990 2.0kb downstream 2.0kb downstream 5661 true Chr3: 8668918-8674578 Arabidopsis thaliana
AT3G23990 2.0kb downstream 2.0kb downstream 2000 false Chr3: 8672579-8674578 Arabidopsis thaliana
AT3G23990 5.0kb upstream 5.0kb upstream 8661 true Chr3: 8663918-8672578 Arabidopsis thaliana
AT3G23990 5.0kb upstream 5.0kb upstream 5000 false Chr3: 8663918-8668917 Arabidopsis thaliana
AT3G23990 5.0kb downstream 5.0kb downstream 8661 true Chr3: 8668918-8677578 Arabidopsis thaliana
AT3G23990 5.0kb downstream 5.0kb downstream 5000 false Chr3: 8672579-8677578 Arabidopsis thaliana
AT3G23990 10.0kb upstream 10.0kb upstream 13661 true Chr3: 8658918-8672578 Arabidopsis thaliana
AT3G23990 10.0kb upstream 10.0kb upstream 10000 false Chr3: 8658918-8668917 Arabidopsis thaliana
AT3G23990 10.0kb downstream 10.0kb downstream 13661 true Chr3: 8668918-8682578 Arabidopsis thaliana
AT3G23990 10.0kb downstream 10.0kb downstream 10000 false Chr3: 8672579-8682578 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375752 5261 Brassicaceae View MSA
123832558 5264 Brassicales-Malvales View MSA
124321808 5266 SBM View MSA
124250267 5268 Malvidae View MSA
124067840 5270 Rosid View MSA
123743454 5271 Pentapetalae View MSA
122794275 5272 Eudicot View MSA
122050268 5273 Angiosperm View MSA
121346016 5274 Embryophyte View MSA
123428427 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 36.226     High  
cufflinks 33.145     High  
cufflinks 29.577     High  
cufflinks 44.649     High  
cufflinks 23.819       Low
cufflinks 51.72     High High

0 Strain