Gene : AT3G22980 A. thaliana TAIR10
Defline:  (1 of 1) K14536 - ribosome assembly protein 1 (RIA1) Genomic Order:  2405
Name:  ? AT3G22980 Secondary Identifier:  ? PAC:19661025
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G22980 0.5kb upstream 0.5kb upstream 3661 true Chr3: 8160156-8163816 Arabidopsis thaliana
AT3G22980 0.5kb upstream 0.5kb upstream 500 false Chr3: 8163317-8163816 Arabidopsis thaliana
AT3G22980 0.5kb downstream 0.5kb downstream 3661 true Chr3: 8159656-8163316 Arabidopsis thaliana
AT3G22980 0.5kb downstream 0.5kb downstream 500 false Chr3: 8159656-8160155 Arabidopsis thaliana
AT3G22980 1.0kb upstream 1.0kb upstream 4161 true Chr3: 8160156-8164316 Arabidopsis thaliana
AT3G22980 1.0kb upstream 1.0kb upstream 1000 false Chr3: 8163317-8164316 Arabidopsis thaliana
AT3G22980 1.0kb downstream 1.0kb downstream 4161 true Chr3: 8159156-8163316 Arabidopsis thaliana
AT3G22980 1.0kb downstream 1.0kb downstream 1000 false Chr3: 8159156-8160155 Arabidopsis thaliana
AT3G22980 2.0kb upstream 2.0kb upstream 5161 true Chr3: 8160156-8165316 Arabidopsis thaliana
AT3G22980 2.0kb upstream 2.0kb upstream 2000 false Chr3: 8163317-8165316 Arabidopsis thaliana
AT3G22980 2.0kb downstream 2.0kb downstream 5161 true Chr3: 8158156-8163316 Arabidopsis thaliana
AT3G22980 2.0kb downstream 2.0kb downstream 2000 false Chr3: 8158156-8160155 Arabidopsis thaliana
AT3G22980 5.0kb upstream 5.0kb upstream 8161 true Chr3: 8160156-8168316 Arabidopsis thaliana
AT3G22980 5.0kb upstream 5.0kb upstream 5000 false Chr3: 8163317-8168316 Arabidopsis thaliana
AT3G22980 5.0kb downstream 5.0kb downstream 8161 true Chr3: 8155156-8163316 Arabidopsis thaliana
AT3G22980 5.0kb downstream 5.0kb downstream 5000 false Chr3: 8155156-8160155 Arabidopsis thaliana
AT3G22980 10.0kb upstream 10.0kb upstream 13161 true Chr3: 8160156-8173316 Arabidopsis thaliana
AT3G22980 10.0kb upstream 10.0kb upstream 10000 false Chr3: 8163317-8173316 Arabidopsis thaliana
AT3G22980 10.0kb downstream 10.0kb downstream 13161 true Chr3: 8150156-8163316 Arabidopsis thaliana
AT3G22980 10.0kb downstream 10.0kb downstream 10000 false Chr3: 8150156-8160155 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026464 5273 Angiosperm View MSA
122371238 5261 Brassicaceae View MSA
123832910 5264 Brassicales-Malvales View MSA
124341780 5266 SBM View MSA
124237319 5268 Malvidae View MSA
124067600 5270 Rosid View MSA
123739584 5271 Pentapetalae View MSA
122791815 5272 Eudicot View MSA
121346138 5274 Embryophyte View MSA
123424452 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.974        
cufflinks 6.492        
cufflinks 4.702       Low
cufflinks 9.059       High
cufflinks 5.843        
cufflinks 6.94        

0 Strain