Gene : TSO1 A. thaliana TAIR10
Primary Identifier:  ? AT3G22780 Defline:  (1 of 3) PTHR12446//PTHR12446:SF21 - TESMIN/TSO1-RELATED // CRC DOMAIN-CONTAINING PROTEIN TSO1-RELATED
Genomic Order:  2381 Name:  ? AT3G22780
Secondary Identifier:  ? PAC:19659094
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G22780 0.5kb upstream 0.5kb upstream 3959 true Chr3: 8048302-8052260 Arabidopsis thaliana
AT3G22780 0.5kb upstream 0.5kb upstream 500 false Chr3: 8048302-8048801 Arabidopsis thaliana
AT3G22780 0.5kb downstream 0.5kb downstream 3959 true Chr3: 8048802-8052760 Arabidopsis thaliana
AT3G22780 0.5kb downstream 0.5kb downstream 500 false Chr3: 8052261-8052760 Arabidopsis thaliana
AT3G22780 1.0kb upstream 1.0kb upstream 4459 true Chr3: 8047802-8052260 Arabidopsis thaliana
AT3G22780 1.0kb upstream 1.0kb upstream 1000 false Chr3: 8047802-8048801 Arabidopsis thaliana
AT3G22780 1.0kb downstream 1.0kb downstream 4459 true Chr3: 8048802-8053260 Arabidopsis thaliana
AT3G22780 1.0kb downstream 1.0kb downstream 1000 false Chr3: 8052261-8053260 Arabidopsis thaliana
AT3G22780 2.0kb upstream 2.0kb upstream 5459 true Chr3: 8046802-8052260 Arabidopsis thaliana
AT3G22780 2.0kb upstream 2.0kb upstream 2000 false Chr3: 8046802-8048801 Arabidopsis thaliana
AT3G22780 2.0kb downstream 2.0kb downstream 5459 true Chr3: 8048802-8054260 Arabidopsis thaliana
AT3G22780 2.0kb downstream 2.0kb downstream 2000 false Chr3: 8052261-8054260 Arabidopsis thaliana
AT3G22780 5.0kb upstream 5.0kb upstream 8459 true Chr3: 8043802-8052260 Arabidopsis thaliana
AT3G22780 5.0kb upstream 5.0kb upstream 5000 false Chr3: 8043802-8048801 Arabidopsis thaliana
AT3G22780 5.0kb downstream 5.0kb downstream 8459 true Chr3: 8048802-8057260 Arabidopsis thaliana
AT3G22780 5.0kb downstream 5.0kb downstream 5000 false Chr3: 8052261-8057260 Arabidopsis thaliana
AT3G22780 10.0kb upstream 10.0kb upstream 13459 true Chr3: 8038802-8052260 Arabidopsis thaliana
AT3G22780 10.0kb upstream 10.0kb upstream 10000 false Chr3: 8038802-8048801 Arabidopsis thaliana
AT3G22780 10.0kb downstream 10.0kb downstream 13459 true Chr3: 8048802-8062260 Arabidopsis thaliana
AT3G22780 10.0kb downstream 10.0kb downstream 10000 false Chr3: 8052261-8062260 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367858 5261 Brassicaceae View MSA
123837070 5264 Brassicales-Malvales View MSA
124336446 5266 SBM View MSA
124250190 5268 Malvidae View MSA
124072110 5270 Rosid View MSA
123746953 5271 Pentapetalae View MSA
122792977 5272 Eudicot View MSA
122047372 5273 Angiosperm View MSA
121349909 5274 Embryophyte View MSA
123426596 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.68        
cufflinks 16.172        
cufflinks 12.939        
cufflinks 18.612       High
cufflinks 11.251       Low
cufflinks 18.471       High

0 Strain