Gene : LOX5 A. thaliana TAIR10
Primary Identifier:  ? AT3G22400 Defline:  (1 of 1) PTHR11771//PTHR11771:SF53 - LIPOXYGENASE // LINOLEATE 9S-LIPOXYGENASE 5, CHLOROPLASTIC
Genomic Order:  2339 Name:  ? AT3G22400
Secondary Identifier:  ? PAC:19660512
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G22400 0.5kb upstream 0.5kb upstream 4973 true Chr3: 7926379-7931351 Arabidopsis thaliana
AT3G22400 0.5kb upstream 0.5kb upstream 500 false Chr3: 7926379-7926878 Arabidopsis thaliana
AT3G22400 0.5kb downstream 0.5kb downstream 4973 true Chr3: 7926879-7931851 Arabidopsis thaliana
AT3G22400 0.5kb downstream 0.5kb downstream 500 false Chr3: 7931352-7931851 Arabidopsis thaliana
AT3G22400 1.0kb upstream 1.0kb upstream 5473 true Chr3: 7925879-7931351 Arabidopsis thaliana
AT3G22400 1.0kb upstream 1.0kb upstream 1000 false Chr3: 7925879-7926878 Arabidopsis thaliana
AT3G22400 1.0kb downstream 1.0kb downstream 5473 true Chr3: 7926879-7932351 Arabidopsis thaliana
AT3G22400 1.0kb downstream 1.0kb downstream 1000 false Chr3: 7931352-7932351 Arabidopsis thaliana
AT3G22400 2.0kb upstream 2.0kb upstream 6473 true Chr3: 7924879-7931351 Arabidopsis thaliana
AT3G22400 2.0kb upstream 2.0kb upstream 2000 false Chr3: 7924879-7926878 Arabidopsis thaliana
AT3G22400 2.0kb downstream 2.0kb downstream 6473 true Chr3: 7926879-7933351 Arabidopsis thaliana
AT3G22400 2.0kb downstream 2.0kb downstream 2000 false Chr3: 7931352-7933351 Arabidopsis thaliana
AT3G22400 5.0kb upstream 5.0kb upstream 9473 true Chr3: 7921879-7931351 Arabidopsis thaliana
AT3G22400 5.0kb upstream 5.0kb upstream 5000 false Chr3: 7921879-7926878 Arabidopsis thaliana
AT3G22400 5.0kb downstream 5.0kb downstream 9473 true Chr3: 7926879-7936351 Arabidopsis thaliana
AT3G22400 5.0kb downstream 5.0kb downstream 5000 false Chr3: 7931352-7936351 Arabidopsis thaliana
AT3G22400 10.0kb upstream 10.0kb upstream 14473 true Chr3: 7916879-7931351 Arabidopsis thaliana
AT3G22400 10.0kb upstream 10.0kb upstream 10000 false Chr3: 7916879-7926878 Arabidopsis thaliana
AT3G22400 10.0kb downstream 10.0kb downstream 14473 true Chr3: 7926879-7941351 Arabidopsis thaliana
AT3G22400 10.0kb downstream 10.0kb downstream 10000 false Chr3: 7931352-7941351 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122793975 5272 Eudicot View MSA
122376228 5261 Brassicaceae View MSA
123837943 5264 Brassicales-Malvales View MSA
124344316 5266 SBM View MSA
124245222 5268 Malvidae View MSA
124071703 5270 Rosid View MSA
123743828 5271 Pentapetalae View MSA
122049504 5273 Angiosperm View MSA
123429188 5275 Viridiplantae View MSA
121351701 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.496        
cufflinks 9.849        
cufflinks 1.292       Low
cufflinks 13.465       High
cufflinks 1.545       Low
cufflinks 9.759        

0 Strain