Gene : TIC A. thaliana TAIR10
Primary Identifier:  ? AT3G22380 Defline:  (1 of 1) PTHR34798:SF2 - PROTEIN TIME FOR COFFEE
Genomic Order:  2338 Name:  ? AT3G22380
Secondary Identifier:  ? PAC:19658611
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G22380 0.5kb upstream 0.5kb upstream 7106 true Chr3: 7912405-7919510 Arabidopsis thaliana
AT3G22380 0.5kb upstream 0.5kb upstream 500 false Chr3: 7912405-7912904 Arabidopsis thaliana
AT3G22380 0.5kb downstream 0.5kb downstream 7106 true Chr3: 7912905-7920010 Arabidopsis thaliana
AT3G22380 0.5kb downstream 0.5kb downstream 500 false Chr3: 7919511-7920010 Arabidopsis thaliana
AT3G22380 1.0kb upstream 1.0kb upstream 7606 true Chr3: 7911905-7919510 Arabidopsis thaliana
AT3G22380 1.0kb upstream 1.0kb upstream 1000 false Chr3: 7911905-7912904 Arabidopsis thaliana
AT3G22380 1.0kb downstream 1.0kb downstream 7606 true Chr3: 7912905-7920510 Arabidopsis thaliana
AT3G22380 1.0kb downstream 1.0kb downstream 1000 false Chr3: 7919511-7920510 Arabidopsis thaliana
AT3G22380 2.0kb upstream 2.0kb upstream 8606 true Chr3: 7910905-7919510 Arabidopsis thaliana
AT3G22380 2.0kb upstream 2.0kb upstream 2000 false Chr3: 7910905-7912904 Arabidopsis thaliana
AT3G22380 2.0kb downstream 2.0kb downstream 8606 true Chr3: 7912905-7921510 Arabidopsis thaliana
AT3G22380 2.0kb downstream 2.0kb downstream 2000 false Chr3: 7919511-7921510 Arabidopsis thaliana
AT3G22380 5.0kb upstream 5.0kb upstream 11606 true Chr3: 7907905-7919510 Arabidopsis thaliana
AT3G22380 5.0kb upstream 5.0kb upstream 5000 false Chr3: 7907905-7912904 Arabidopsis thaliana
AT3G22380 5.0kb downstream 5.0kb downstream 11606 true Chr3: 7912905-7924510 Arabidopsis thaliana
AT3G22380 5.0kb downstream 5.0kb downstream 5000 false Chr3: 7919511-7924510 Arabidopsis thaliana
AT3G22380 10.0kb upstream 10.0kb upstream 16606 true Chr3: 7902905-7919510 Arabidopsis thaliana
AT3G22380 10.0kb upstream 10.0kb upstream 10000 false Chr3: 7902905-7912904 Arabidopsis thaliana
AT3G22380 10.0kb downstream 10.0kb downstream 16606 true Chr3: 7912905-7929510 Arabidopsis thaliana
AT3G22380 10.0kb downstream 10.0kb downstream 10000 false Chr3: 7919511-7929510 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363549 5261 Brassicaceae View MSA
123838389 5264 Brassicales-Malvales View MSA
124343026 5266 SBM View MSA
124242340 5268 Malvidae View MSA
124068885 5270 Rosid View MSA
123740436 5271 Pentapetalae View MSA
122788537 5272 Eudicot View MSA
122049796 5273 Angiosperm View MSA
121350697 5274 Embryophyte View MSA
123381850 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.892       Low
cufflinks 20.054        
cufflinks 19.405        
cufflinks 22.613       High
cufflinks 19.631        
cufflinks 19.545        

0 Strain