Gene : AT3G22160 A. thaliana TAIR10
Defline:  (1 of 2) PTHR33179//PTHR33179:SF7 - FAMILY NOT NAMED // GENOMIC DNA, CHROMOSOME 3, P1 CLONE:MKA23 Genomic Order:  2313
Name:  ? AT3G22160 Secondary Identifier:  ? PAC:19664660
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G22160 0.5kb upstream 0.5kb upstream 1629 true Chr3: 7817857-7819485 Arabidopsis thaliana
AT3G22160 0.5kb upstream 0.5kb upstream 500 false Chr3: 7818986-7819485 Arabidopsis thaliana
AT3G22160 0.5kb downstream 0.5kb downstream 1629 true Chr3: 7817357-7818985 Arabidopsis thaliana
AT3G22160 0.5kb downstream 0.5kb downstream 500 false Chr3: 7817357-7817856 Arabidopsis thaliana
AT3G22160 1.0kb upstream 1.0kb upstream 2129 true Chr3: 7817857-7819985 Arabidopsis thaliana
AT3G22160 1.0kb upstream 1.0kb upstream 1000 false Chr3: 7818986-7819985 Arabidopsis thaliana
AT3G22160 1.0kb downstream 1.0kb downstream 2129 true Chr3: 7816857-7818985 Arabidopsis thaliana
AT3G22160 1.0kb downstream 1.0kb downstream 1000 false Chr3: 7816857-7817856 Arabidopsis thaliana
AT3G22160 2.0kb upstream 2.0kb upstream 3129 true Chr3: 7817857-7820985 Arabidopsis thaliana
AT3G22160 2.0kb upstream 2.0kb upstream 2000 false Chr3: 7818986-7820985 Arabidopsis thaliana
AT3G22160 2.0kb downstream 2.0kb downstream 3129 true Chr3: 7815857-7818985 Arabidopsis thaliana
AT3G22160 2.0kb downstream 2.0kb downstream 2000 false Chr3: 7815857-7817856 Arabidopsis thaliana
AT3G22160 5.0kb upstream 5.0kb upstream 6129 true Chr3: 7817857-7823985 Arabidopsis thaliana
AT3G22160 5.0kb upstream 5.0kb upstream 5000 false Chr3: 7818986-7823985 Arabidopsis thaliana
AT3G22160 5.0kb downstream 5.0kb downstream 6129 true Chr3: 7812857-7818985 Arabidopsis thaliana
AT3G22160 5.0kb downstream 5.0kb downstream 5000 false Chr3: 7812857-7817856 Arabidopsis thaliana
AT3G22160 10.0kb upstream 10.0kb upstream 11129 true Chr3: 7817857-7828985 Arabidopsis thaliana
AT3G22160 10.0kb upstream 10.0kb upstream 10000 false Chr3: 7818986-7828985 Arabidopsis thaliana
AT3G22160 10.0kb downstream 10.0kb downstream 11129 true Chr3: 7807857-7818985 Arabidopsis thaliana
AT3G22160 10.0kb downstream 10.0kb downstream 10000 false Chr3: 7807857-7817856 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373964 5261 Brassicaceae View MSA
123837608 5264 Brassicales-Malvales View MSA
124344282 5266 SBM View MSA
124249798 5268 Malvidae View MSA
124071410 5270 Rosid View MSA
123750267 5271 Pentapetalae View MSA
122794981 5272 Eudicot View MSA
122048174 5273 Angiosperm View MSA
121350948 5274 Embryophyte View MSA
123381944 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.247        
cufflinks 9.344        
cufflinks 9.076        
cufflinks 12.445       High
cufflinks 10.529        
cufflinks 6.693       Low

0 Strain