Gene : AT3G21880 A. thaliana TAIR10
Defline:  (1 of 4) PTHR31717//PTHR31717:SF13 - FAMILY NOT NAMED // CCT MOTIF FAMILY PROTEIN-RELATED Genomic Order:  2281
Name:  ? AT3G21880 Secondary Identifier:  ? PAC:19660612
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G21880 0.5kb upstream 0.5kb upstream 1846 true Chr3: 7706248-7708093 Arabidopsis thaliana
AT3G21880 0.5kb upstream 0.5kb upstream 500 false Chr3: 7706248-7706747 Arabidopsis thaliana
AT3G21880 0.5kb downstream 0.5kb downstream 1846 true Chr3: 7706748-7708593 Arabidopsis thaliana
AT3G21880 0.5kb downstream 0.5kb downstream 500 false Chr3: 7708094-7708593 Arabidopsis thaliana
AT3G21880 1.0kb upstream 1.0kb upstream 2346 true Chr3: 7705748-7708093 Arabidopsis thaliana
AT3G21880 1.0kb upstream 1.0kb upstream 1000 false Chr3: 7705748-7706747 Arabidopsis thaliana
AT3G21880 1.0kb downstream 1.0kb downstream 2346 true Chr3: 7706748-7709093 Arabidopsis thaliana
AT3G21880 1.0kb downstream 1.0kb downstream 1000 false Chr3: 7708094-7709093 Arabidopsis thaliana
AT3G21880 2.0kb upstream 2.0kb upstream 3346 true Chr3: 7704748-7708093 Arabidopsis thaliana
AT3G21880 2.0kb upstream 2.0kb upstream 2000 false Chr3: 7704748-7706747 Arabidopsis thaliana
AT3G21880 2.0kb downstream 2.0kb downstream 3346 true Chr3: 7706748-7710093 Arabidopsis thaliana
AT3G21880 2.0kb downstream 2.0kb downstream 2000 false Chr3: 7708094-7710093 Arabidopsis thaliana
AT3G21880 5.0kb upstream 5.0kb upstream 6346 true Chr3: 7701748-7708093 Arabidopsis thaliana
AT3G21880 5.0kb upstream 5.0kb upstream 5000 false Chr3: 7701748-7706747 Arabidopsis thaliana
AT3G21880 5.0kb downstream 5.0kb downstream 6346 true Chr3: 7706748-7713093 Arabidopsis thaliana
AT3G21880 5.0kb downstream 5.0kb downstream 5000 false Chr3: 7708094-7713093 Arabidopsis thaliana
AT3G21880 10.0kb upstream 10.0kb upstream 11346 true Chr3: 7696748-7708093 Arabidopsis thaliana
AT3G21880 10.0kb upstream 10.0kb upstream 10000 false Chr3: 7696748-7706747 Arabidopsis thaliana
AT3G21880 10.0kb downstream 10.0kb downstream 11346 true Chr3: 7706748-7718093 Arabidopsis thaliana
AT3G21880 10.0kb downstream 10.0kb downstream 10000 false Chr3: 7708094-7718093 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375262 5261 Brassicaceae View MSA
123829204 5264 Brassicales-Malvales View MSA
124344956 5266 SBM View MSA
124253317 5268 Malvidae View MSA
124068852 5270 Rosid View MSA
123751246 5271 Pentapetalae View MSA
122785793 5272 Eudicot View MSA
122049477 5273 Angiosperm View MSA
123428935 5275 Viridiplantae View MSA
121350351 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.011     Low  
cufflinks 0.012     Low  
cufflinks 0.012     Low  
cufflinks 0.023     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.036     Low High

0 Strain