Gene : PAC1 A. thaliana TAIR10
Primary Identifier:  ? AT3G22110 Defline:  (1 of 1) K02728 - 20S proteasome subunit alpha 3 (PSMA4)
Genomic Order:  2309 Name:  ? AT3G22110
Secondary Identifier:  ? PAC:19663555
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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G22110 0.5kb upstream 0.5kb upstream 2028 true Chr3: 7792638-7794665 Arabidopsis thaliana
AT3G22110 0.5kb upstream 0.5kb upstream 500 false Chr3: 7794166-7794665 Arabidopsis thaliana
AT3G22110 0.5kb downstream 0.5kb downstream 2028 true Chr3: 7792138-7794165 Arabidopsis thaliana
AT3G22110 0.5kb downstream 0.5kb downstream 500 false Chr3: 7792138-7792637 Arabidopsis thaliana
AT3G22110 1.0kb upstream 1.0kb upstream 2528 true Chr3: 7792638-7795165 Arabidopsis thaliana
AT3G22110 1.0kb upstream 1.0kb upstream 1000 false Chr3: 7794166-7795165 Arabidopsis thaliana
AT3G22110 1.0kb downstream 1.0kb downstream 2528 true Chr3: 7791638-7794165 Arabidopsis thaliana
AT3G22110 1.0kb downstream 1.0kb downstream 1000 false Chr3: 7791638-7792637 Arabidopsis thaliana
AT3G22110 2.0kb upstream 2.0kb upstream 3528 true Chr3: 7792638-7796165 Arabidopsis thaliana
AT3G22110 2.0kb upstream 2.0kb upstream 2000 false Chr3: 7794166-7796165 Arabidopsis thaliana
AT3G22110 2.0kb downstream 2.0kb downstream 3528 true Chr3: 7790638-7794165 Arabidopsis thaliana
AT3G22110 2.0kb downstream 2.0kb downstream 2000 false Chr3: 7790638-7792637 Arabidopsis thaliana
AT3G22110 5.0kb upstream 5.0kb upstream 6528 true Chr3: 7792638-7799165 Arabidopsis thaliana
AT3G22110 5.0kb upstream 5.0kb upstream 5000 false Chr3: 7794166-7799165 Arabidopsis thaliana
AT3G22110 5.0kb downstream 5.0kb downstream 6528 true Chr3: 7787638-7794165 Arabidopsis thaliana
AT3G22110 5.0kb downstream 5.0kb downstream 5000 false Chr3: 7787638-7792637 Arabidopsis thaliana
AT3G22110 10.0kb upstream 10.0kb upstream 11528 true Chr3: 7792638-7804165 Arabidopsis thaliana
AT3G22110 10.0kb upstream 10.0kb upstream 10000 false Chr3: 7794166-7804165 Arabidopsis thaliana
AT3G22110 10.0kb downstream 10.0kb downstream 11528 true Chr3: 7782638-7794165 Arabidopsis thaliana
AT3G22110 10.0kb downstream 10.0kb downstream 10000 false Chr3: 7782638-7792637 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378710 5261 Brassicaceae View MSA
123836342 5264 Brassicales-Malvales View MSA
124339595 5266 SBM View MSA
124237536 5268 Malvidae View MSA
124065392 5270 Rosid View MSA
123752544 5271 Pentapetalae View MSA
122786754 5272 Eudicot View MSA
122049144 5273 Angiosperm View MSA
121351432 5274 Embryophyte View MSA
123426590 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 67.188     High  
cufflinks 61.608     High  
cufflinks 53.337     High Low
cufflinks 68.942     High  
cufflinks 58.308     High  
cufflinks 81.067     High High

0 Strain