Gene : AT3G45577 A. thaliana TAIR10
Defline:  (1 of 3) 4.6.1.16 - tRNA-intron lyase / tRNA splicing endonuclease Genomic Order:  3538
Name:  ? AT3G45577 Secondary Identifier:  ? PAC:19660227
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-6689 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G45577 0.5kb upstream 0.5kb upstream 1347 true Chr3: 16728201-16729547 Arabidopsis thaliana
AT3G45577 0.5kb upstream 0.5kb upstream 500 false Chr3: 16728201-16728700 Arabidopsis thaliana
AT3G45577 0.5kb downstream 0.5kb downstream 1347 true Chr3: 16728701-16730047 Arabidopsis thaliana
AT3G45577 0.5kb downstream 0.5kb downstream 500 false Chr3: 16729548-16730047 Arabidopsis thaliana
AT3G45577 1.0kb upstream 1.0kb upstream 1847 true Chr3: 16727701-16729547 Arabidopsis thaliana
AT3G45577 1.0kb upstream 1.0kb upstream 1000 false Chr3: 16727701-16728700 Arabidopsis thaliana
AT3G45577 1.0kb downstream 1.0kb downstream 1847 true Chr3: 16728701-16730547 Arabidopsis thaliana
AT3G45577 1.0kb downstream 1.0kb downstream 1000 false Chr3: 16729548-16730547 Arabidopsis thaliana
AT3G45577 2.0kb upstream 2.0kb upstream 2847 true Chr3: 16726701-16729547 Arabidopsis thaliana
AT3G45577 2.0kb upstream 2.0kb upstream 2000 false Chr3: 16726701-16728700 Arabidopsis thaliana
AT3G45577 2.0kb downstream 2.0kb downstream 2847 true Chr3: 16728701-16731547 Arabidopsis thaliana
AT3G45577 2.0kb downstream 2.0kb downstream 2000 false Chr3: 16729548-16731547 Arabidopsis thaliana
AT3G45577 5.0kb upstream 5.0kb upstream 5847 true Chr3: 16723701-16729547 Arabidopsis thaliana
AT3G45577 5.0kb upstream 5.0kb upstream 5000 false Chr3: 16723701-16728700 Arabidopsis thaliana
AT3G45577 5.0kb downstream 5.0kb downstream 5847 true Chr3: 16728701-16734547 Arabidopsis thaliana
AT3G45577 5.0kb downstream 5.0kb downstream 5000 false Chr3: 16729548-16734547 Arabidopsis thaliana
AT3G45577 10.0kb upstream 10.0kb upstream 10847 true Chr3: 16718701-16729547 Arabidopsis thaliana
AT3G45577 10.0kb upstream 10.0kb upstream 10000 false Chr3: 16718701-16728700 Arabidopsis thaliana
AT3G45577 10.0kb downstream 10.0kb downstream 10847 true Chr3: 16728701-16739547 Arabidopsis thaliana
AT3G45577 10.0kb downstream 10.0kb downstream 10000 false Chr3: 16729548-16739547 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121494236 5273 Angiosperm Singleton cluster - no MSA
122329834 5261 Brassicaceae Singleton cluster - no MSA
123771119 5264 Brassicales-Malvales Singleton cluster - no MSA
124269651 5266 SBM Singleton cluster - no MSA
124125780 5268 Malvidae Singleton cluster - no MSA
123854734 5270 Rosid Singleton cluster - no MSA
123440743 5271 Pentapetalae Singleton cluster - no MSA
122476328 5272 Eudicot Singleton cluster - no MSA
120767605 5274 Embryophyte Singleton cluster - no MSA
122809999 5275 Viridiplantae Singleton cluster - no MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.02     Low  

0 Strain