Gene : LOX2 A. thaliana TAIR10
Primary Identifier:  ? AT3G45140 Defline:  (1 of 1) PTHR11771//PTHR11771:SF42 - LIPOXYGENASE // PROTEIN C13C4.7
Genomic Order:  3493 Name:  ? AT3G45140
Secondary Identifier:  ? PAC:19664994
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Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5409 Arabidopsis thaliana pathologic  
Athaliana PWY-5410 Arabidopsis thaliana pathologic  
Athaliana PWY-735 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G45140 0.5kb upstream 0.5kb upstream 4443 true Chr3: 16524910-16529352 Arabidopsis thaliana
AT3G45140 0.5kb upstream 0.5kb upstream 500 false Chr3: 16524910-16525409 Arabidopsis thaliana
AT3G45140 0.5kb downstream 0.5kb downstream 4443 true Chr3: 16525410-16529852 Arabidopsis thaliana
AT3G45140 0.5kb downstream 0.5kb downstream 500 false Chr3: 16529353-16529852 Arabidopsis thaliana
AT3G45140 1.0kb upstream 1.0kb upstream 4943 true Chr3: 16524410-16529352 Arabidopsis thaliana
AT3G45140 1.0kb upstream 1.0kb upstream 1000 false Chr3: 16524410-16525409 Arabidopsis thaliana
AT3G45140 1.0kb downstream 1.0kb downstream 4943 true Chr3: 16525410-16530352 Arabidopsis thaliana
AT3G45140 1.0kb downstream 1.0kb downstream 1000 false Chr3: 16529353-16530352 Arabidopsis thaliana
AT3G45140 2.0kb upstream 2.0kb upstream 5943 true Chr3: 16523410-16529352 Arabidopsis thaliana
AT3G45140 2.0kb upstream 2.0kb upstream 2000 false Chr3: 16523410-16525409 Arabidopsis thaliana
AT3G45140 2.0kb downstream 2.0kb downstream 5943 true Chr3: 16525410-16531352 Arabidopsis thaliana
AT3G45140 2.0kb downstream 2.0kb downstream 2000 false Chr3: 16529353-16531352 Arabidopsis thaliana
AT3G45140 5.0kb upstream 5.0kb upstream 8943 true Chr3: 16520410-16529352 Arabidopsis thaliana
AT3G45140 5.0kb upstream 5.0kb upstream 5000 false Chr3: 16520410-16525409 Arabidopsis thaliana
AT3G45140 5.0kb downstream 5.0kb downstream 8943 true Chr3: 16525410-16534352 Arabidopsis thaliana
AT3G45140 5.0kb downstream 5.0kb downstream 5000 false Chr3: 16529353-16534352 Arabidopsis thaliana
AT3G45140 10.0kb upstream 10.0kb upstream 13943 true Chr3: 16515410-16529352 Arabidopsis thaliana
AT3G45140 10.0kb upstream 10.0kb upstream 10000 false Chr3: 16515410-16525409 Arabidopsis thaliana
AT3G45140 10.0kb downstream 10.0kb downstream 13943 true Chr3: 16525410-16539352 Arabidopsis thaliana
AT3G45140 10.0kb downstream 10.0kb downstream 10000 false Chr3: 16529353-16539352 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363495 5261 Brassicaceae View MSA
123837104 5264 Brassicales-Malvales View MSA
124342225 5266 SBM View MSA
124251486 5268 Malvidae View MSA
124069762 5270 Rosid View MSA
123743667 5271 Pentapetalae View MSA
122789767 5272 Eudicot View MSA
122043119 5273 Angiosperm View MSA
123429188 5275 Viridiplantae View MSA
121351701 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 610.914     High  
cufflinks 0.073     Low Low
cufflinks 591.44     High  
cufflinks 0.414     Low  
cufflinks 665.652     High  
cufflinks 0.293     Low  

0 Strain