Gene : ACD1 A. thaliana TAIR10
Primary Identifier:  ? AT3G44880 Defline:  (1 of 1) K13071 - pheophorbide a oxygenase (PAO, ACD1)
Genomic Order:  3466 Name:  ? AT3G44880
Secondary Identifier:  ? PAC:19664072
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5098 Arabidopsis thaliana pathologic  
Athaliana PWY-6927 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G44880 0.5kb upstream 0.5kb upstream 3218 true Chr3: 16383095-16386312 Arabidopsis thaliana
AT3G44880 0.5kb upstream 0.5kb upstream 500 false Chr3: 16383095-16383594 Arabidopsis thaliana
AT3G44880 0.5kb downstream 0.5kb downstream 3218 true Chr3: 16383595-16386812 Arabidopsis thaliana
AT3G44880 0.5kb downstream 0.5kb downstream 500 false Chr3: 16386313-16386812 Arabidopsis thaliana
AT3G44880 1.0kb upstream 1.0kb upstream 3718 true Chr3: 16382595-16386312 Arabidopsis thaliana
AT3G44880 1.0kb upstream 1.0kb upstream 1000 false Chr3: 16382595-16383594 Arabidopsis thaliana
AT3G44880 1.0kb downstream 1.0kb downstream 3718 true Chr3: 16383595-16387312 Arabidopsis thaliana
AT3G44880 1.0kb downstream 1.0kb downstream 1000 false Chr3: 16386313-16387312 Arabidopsis thaliana
AT3G44880 2.0kb upstream 2.0kb upstream 4718 true Chr3: 16381595-16386312 Arabidopsis thaliana
AT3G44880 2.0kb upstream 2.0kb upstream 2000 false Chr3: 16381595-16383594 Arabidopsis thaliana
AT3G44880 2.0kb downstream 2.0kb downstream 4718 true Chr3: 16383595-16388312 Arabidopsis thaliana
AT3G44880 2.0kb downstream 2.0kb downstream 2000 false Chr3: 16386313-16388312 Arabidopsis thaliana
AT3G44880 5.0kb upstream 5.0kb upstream 7718 true Chr3: 16378595-16386312 Arabidopsis thaliana
AT3G44880 5.0kb upstream 5.0kb upstream 5000 false Chr3: 16378595-16383594 Arabidopsis thaliana
AT3G44880 5.0kb downstream 5.0kb downstream 7718 true Chr3: 16383595-16391312 Arabidopsis thaliana
AT3G44880 5.0kb downstream 5.0kb downstream 5000 false Chr3: 16386313-16391312 Arabidopsis thaliana
AT3G44880 10.0kb upstream 10.0kb upstream 12718 true Chr3: 16373595-16386312 Arabidopsis thaliana
AT3G44880 10.0kb upstream 10.0kb upstream 10000 false Chr3: 16373595-16383594 Arabidopsis thaliana
AT3G44880 10.0kb downstream 10.0kb downstream 12718 true Chr3: 16383595-16396312 Arabidopsis thaliana
AT3G44880 10.0kb downstream 10.0kb downstream 10000 false Chr3: 16386313-16396312 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367692 5261 Brassicaceae View MSA
123834068 5264 Brassicales-Malvales View MSA
124342673 5266 SBM View MSA
124241153 5268 Malvidae View MSA
124063848 5270 Rosid View MSA
123748606 5271 Pentapetalae View MSA
122790785 5272 Eudicot View MSA
122042360 5273 Angiosperm View MSA
123429167 5275 Viridiplantae View MSA
121346632 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 37.004     High  
cufflinks 2.949        
cufflinks 47.812     High  
cufflinks 3.96        
cufflinks 63.276     High High
cufflinks 2.812        

0 Strain