Gene : AT3G43520 A. thaliana TAIR10
Defline:  (1 of 2) PTHR12668//PTHR12668:SF5 - TRANSMEMBRANE PROTEIN 14, 15 // UPF0136 MEMBRANE PROTEIN YJR085C Genomic Order:  3330
Name:  ? AT3G43520 Secondary Identifier:  ? PAC:19662303
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G43520 0.5kb upstream 0.5kb upstream 2386 true Chr3: 15405523-15407908 Arabidopsis thaliana
AT3G43520 0.5kb upstream 0.5kb upstream 500 false Chr3: 15405523-15406022 Arabidopsis thaliana
AT3G43520 0.5kb downstream 0.5kb downstream 2386 true Chr3: 15406023-15408408 Arabidopsis thaliana
AT3G43520 0.5kb downstream 0.5kb downstream 500 false Chr3: 15407909-15408408 Arabidopsis thaliana
AT3G43520 1.0kb upstream 1.0kb upstream 2886 true Chr3: 15405023-15407908 Arabidopsis thaliana
AT3G43520 1.0kb upstream 1.0kb upstream 1000 false Chr3: 15405023-15406022 Arabidopsis thaliana
AT3G43520 1.0kb downstream 1.0kb downstream 2886 true Chr3: 15406023-15408908 Arabidopsis thaliana
AT3G43520 1.0kb downstream 1.0kb downstream 1000 false Chr3: 15407909-15408908 Arabidopsis thaliana
AT3G43520 2.0kb upstream 2.0kb upstream 3886 true Chr3: 15404023-15407908 Arabidopsis thaliana
AT3G43520 2.0kb upstream 2.0kb upstream 2000 false Chr3: 15404023-15406022 Arabidopsis thaliana
AT3G43520 2.0kb downstream 2.0kb downstream 3886 true Chr3: 15406023-15409908 Arabidopsis thaliana
AT3G43520 2.0kb downstream 2.0kb downstream 2000 false Chr3: 15407909-15409908 Arabidopsis thaliana
AT3G43520 5.0kb upstream 5.0kb upstream 6886 true Chr3: 15401023-15407908 Arabidopsis thaliana
AT3G43520 5.0kb upstream 5.0kb upstream 5000 false Chr3: 15401023-15406022 Arabidopsis thaliana
AT3G43520 5.0kb downstream 5.0kb downstream 6886 true Chr3: 15406023-15412908 Arabidopsis thaliana
AT3G43520 5.0kb downstream 5.0kb downstream 5000 false Chr3: 15407909-15412908 Arabidopsis thaliana
AT3G43520 10.0kb upstream 10.0kb upstream 11886 true Chr3: 15396023-15407908 Arabidopsis thaliana
AT3G43520 10.0kb upstream 10.0kb upstream 10000 false Chr3: 15396023-15406022 Arabidopsis thaliana
AT3G43520 10.0kb downstream 10.0kb downstream 11886 true Chr3: 15406023-15417908 Arabidopsis thaliana
AT3G43520 10.0kb downstream 10.0kb downstream 10000 false Chr3: 15407909-15417908 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366695 5261 Brassicaceae View MSA
123839267 5264 Brassicales-Malvales View MSA
124343542 5266 SBM View MSA
124238887 5268 Malvidae View MSA
124067619 5270 Rosid View MSA
123736820 5271 Pentapetalae View MSA
122786957 5272 Eudicot View MSA
122047216 5273 Angiosperm View MSA
121351322 5274 Embryophyte View MSA
123426664 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 40.32     High  
cufflinks 26.248       Low
cufflinks 39.167     High  
cufflinks 27.209        
cufflinks 41.507     High High
cufflinks 27.106        

0 Strain