Gene : AT3G43540 A. thaliana TAIR10
Defline:  (1 of 2) PF07082 - Protein of unknown function (DUF1350) (DUF1350) Genomic Order:  3331
Name:  ? AT3G43540 Secondary Identifier:  ? PAC:19660010
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G43540 0.5kb upstream 0.5kb upstream 2999 true Chr3: 15430189-15433187 Arabidopsis thaliana
AT3G43540 0.5kb upstream 0.5kb upstream 500 false Chr3: 15430189-15430688 Arabidopsis thaliana
AT3G43540 0.5kb downstream 0.5kb downstream 2999 true Chr3: 15430689-15433687 Arabidopsis thaliana
AT3G43540 0.5kb downstream 0.5kb downstream 500 false Chr3: 15433188-15433687 Arabidopsis thaliana
AT3G43540 1.0kb upstream 1.0kb upstream 3499 true Chr3: 15429689-15433187 Arabidopsis thaliana
AT3G43540 1.0kb upstream 1.0kb upstream 1000 false Chr3: 15429689-15430688 Arabidopsis thaliana
AT3G43540 1.0kb downstream 1.0kb downstream 3499 true Chr3: 15430689-15434187 Arabidopsis thaliana
AT3G43540 1.0kb downstream 1.0kb downstream 1000 false Chr3: 15433188-15434187 Arabidopsis thaliana
AT3G43540 2.0kb upstream 2.0kb upstream 4499 true Chr3: 15428689-15433187 Arabidopsis thaliana
AT3G43540 2.0kb upstream 2.0kb upstream 2000 false Chr3: 15428689-15430688 Arabidopsis thaliana
AT3G43540 2.0kb downstream 2.0kb downstream 4499 true Chr3: 15430689-15435187 Arabidopsis thaliana
AT3G43540 2.0kb downstream 2.0kb downstream 2000 false Chr3: 15433188-15435187 Arabidopsis thaliana
AT3G43540 5.0kb upstream 5.0kb upstream 7499 true Chr3: 15425689-15433187 Arabidopsis thaliana
AT3G43540 5.0kb upstream 5.0kb upstream 5000 false Chr3: 15425689-15430688 Arabidopsis thaliana
AT3G43540 5.0kb downstream 5.0kb downstream 7499 true Chr3: 15430689-15438187 Arabidopsis thaliana
AT3G43540 5.0kb downstream 5.0kb downstream 5000 false Chr3: 15433188-15438187 Arabidopsis thaliana
AT3G43540 10.0kb upstream 10.0kb upstream 12499 true Chr3: 15420689-15433187 Arabidopsis thaliana
AT3G43540 10.0kb upstream 10.0kb upstream 10000 false Chr3: 15420689-15430688 Arabidopsis thaliana
AT3G43540 10.0kb downstream 10.0kb downstream 12499 true Chr3: 15430689-15443187 Arabidopsis thaliana
AT3G43540 10.0kb downstream 10.0kb downstream 10000 false Chr3: 15433188-15443187 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371338 5261 Brassicaceae View MSA
123834043 5264 Brassicales-Malvales View MSA
124321919 5266 SBM View MSA
124238512 5268 Malvidae View MSA
124067558 5270 Rosid View MSA
123739395 5271 Pentapetalae View MSA
122785869 5272 Eudicot View MSA
122042192 5273 Angiosperm View MSA
121344572 5274 Embryophyte View MSA
123427638 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.435        
cufflinks 4.153        
cufflinks 11.198       High
cufflinks 3.403        
cufflinks 11.17       High
cufflinks 3.015       Low

0 Strain