Gene : AT3G43670 A. thaliana TAIR10
Defline:  (1 of 2) PTHR10638//PTHR10638:SF38 - COPPER AMINE OXIDASE // PRIMARY AMINE OXIDASE Genomic Order:  3344
Name:  ? AT3G43670 Secondary Identifier:  ? PAC:19661140
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5751 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G43670 0.5kb upstream 0.5kb upstream 3303 true Chr3: 15566599-15569901 Arabidopsis thaliana
AT3G43670 0.5kb upstream 0.5kb upstream 500 false Chr3: 15566599-15567098 Arabidopsis thaliana
AT3G43670 0.5kb downstream 0.5kb downstream 3303 true Chr3: 15567099-15570401 Arabidopsis thaliana
AT3G43670 0.5kb downstream 0.5kb downstream 500 false Chr3: 15569902-15570401 Arabidopsis thaliana
AT3G43670 1.0kb upstream 1.0kb upstream 3803 true Chr3: 15566099-15569901 Arabidopsis thaliana
AT3G43670 1.0kb upstream 1.0kb upstream 1000 false Chr3: 15566099-15567098 Arabidopsis thaliana
AT3G43670 1.0kb downstream 1.0kb downstream 3803 true Chr3: 15567099-15570901 Arabidopsis thaliana
AT3G43670 1.0kb downstream 1.0kb downstream 1000 false Chr3: 15569902-15570901 Arabidopsis thaliana
AT3G43670 2.0kb upstream 2.0kb upstream 4803 true Chr3: 15565099-15569901 Arabidopsis thaliana
AT3G43670 2.0kb upstream 2.0kb upstream 2000 false Chr3: 15565099-15567098 Arabidopsis thaliana
AT3G43670 2.0kb downstream 2.0kb downstream 4803 true Chr3: 15567099-15571901 Arabidopsis thaliana
AT3G43670 2.0kb downstream 2.0kb downstream 2000 false Chr3: 15569902-15571901 Arabidopsis thaliana
AT3G43670 5.0kb upstream 5.0kb upstream 7803 true Chr3: 15562099-15569901 Arabidopsis thaliana
AT3G43670 5.0kb upstream 5.0kb upstream 5000 false Chr3: 15562099-15567098 Arabidopsis thaliana
AT3G43670 5.0kb downstream 5.0kb downstream 7803 true Chr3: 15567099-15574901 Arabidopsis thaliana
AT3G43670 5.0kb downstream 5.0kb downstream 5000 false Chr3: 15569902-15574901 Arabidopsis thaliana
AT3G43670 10.0kb upstream 10.0kb upstream 12803 true Chr3: 15557099-15569901 Arabidopsis thaliana
AT3G43670 10.0kb upstream 10.0kb upstream 10000 false Chr3: 15557099-15567098 Arabidopsis thaliana
AT3G43670 10.0kb downstream 10.0kb downstream 12803 true Chr3: 15567099-15579901 Arabidopsis thaliana
AT3G43670 10.0kb downstream 10.0kb downstream 10000 false Chr3: 15569902-15579901 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122329926 5261 Brassicaceae Singleton cluster - no MSA
123771205 5264 Brassicales-Malvales Singleton cluster - no MSA
124269737 5266 SBM Singleton cluster - no MSA
124125860 5268 Malvidae Singleton cluster - no MSA
123854808 5270 Rosid Singleton cluster - no MSA
123751770 5271 Pentapetalae View MSA
122795506 5272 Eudicot View MSA
122049910 5273 Angiosperm View MSA
123428923 5275 Viridiplantae View MSA
121349913 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 27.697        
cufflinks 28.57        
cufflinks 39.166     High High
cufflinks 27.54        
cufflinks 30.161     High  
cufflinks 25.734        

0 Strain