Gene : ATA1 A. thaliana TAIR10
Primary Identifier:  ? AT3G42960 Defline:  (1 of 1) PTHR24322:SF510 - ALCOHOL DEHYDROGENASE (ATA1)
Genomic Order:  3292 Name:  ? AT3G42960
Secondary Identifier:  ? PAC:19659916
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-695 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G42960 0.5kb upstream 0.5kb upstream 1491 true Chr3: 15018695-15020185 Arabidopsis thaliana
AT3G42960 0.5kb upstream 0.5kb upstream 500 false Chr3: 15019686-15020185 Arabidopsis thaliana
AT3G42960 0.5kb downstream 0.5kb downstream 1491 true Chr3: 15018195-15019685 Arabidopsis thaliana
AT3G42960 0.5kb downstream 0.5kb downstream 500 false Chr3: 15018195-15018694 Arabidopsis thaliana
AT3G42960 1.0kb upstream 1.0kb upstream 1991 true Chr3: 15018695-15020685 Arabidopsis thaliana
AT3G42960 1.0kb upstream 1.0kb upstream 1000 false Chr3: 15019686-15020685 Arabidopsis thaliana
AT3G42960 1.0kb downstream 1.0kb downstream 1991 true Chr3: 15017695-15019685 Arabidopsis thaliana
AT3G42960 1.0kb downstream 1.0kb downstream 1000 false Chr3: 15017695-15018694 Arabidopsis thaliana
AT3G42960 2.0kb upstream 2.0kb upstream 2991 true Chr3: 15018695-15021685 Arabidopsis thaliana
AT3G42960 2.0kb upstream 2.0kb upstream 2000 false Chr3: 15019686-15021685 Arabidopsis thaliana
AT3G42960 2.0kb downstream 2.0kb downstream 2991 true Chr3: 15016695-15019685 Arabidopsis thaliana
AT3G42960 2.0kb downstream 2.0kb downstream 2000 false Chr3: 15016695-15018694 Arabidopsis thaliana
AT3G42960 5.0kb upstream 5.0kb upstream 5991 true Chr3: 15018695-15024685 Arabidopsis thaliana
AT3G42960 5.0kb upstream 5.0kb upstream 5000 false Chr3: 15019686-15024685 Arabidopsis thaliana
AT3G42960 5.0kb downstream 5.0kb downstream 5991 true Chr3: 15013695-15019685 Arabidopsis thaliana
AT3G42960 5.0kb downstream 5.0kb downstream 5000 false Chr3: 15013695-15018694 Arabidopsis thaliana
AT3G42960 10.0kb upstream 10.0kb upstream 10991 true Chr3: 15018695-15029685 Arabidopsis thaliana
AT3G42960 10.0kb upstream 10.0kb upstream 10000 false Chr3: 15019686-15029685 Arabidopsis thaliana
AT3G42960 10.0kb downstream 10.0kb downstream 10991 true Chr3: 15008695-15019685 Arabidopsis thaliana
AT3G42960 10.0kb downstream 10.0kb downstream 10000 false Chr3: 15008695-15018694 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122371736 5261 Brassicaceae View MSA
123827401 5264 Brassicales-Malvales View MSA
124342614 5266 SBM View MSA
124239258 5268 Malvidae View MSA
124061755 5270 Rosid View MSA
123748267 5271 Pentapetalae View MSA
122788265 5272 Eudicot View MSA
122042997 5273 Angiosperm View MSA
123429133 5275 Viridiplantae View MSA
121351668 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.392        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.082     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.285        
cufflinks 0.0     Not Expressed Not Expressed

0 Strain