Gene : HMG A. thaliana TAIR10
Primary Identifier:  ? AT3G28730 Defline:  (1 of 1) K09272 - structure-specific recognition protein 1 (SSRP1)
Genomic Order:  3043 Name:  ? AT3G28730
Secondary Identifier:  ? PAC:19660995
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Expression

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4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G28730 0.5kb upstream 0.5kb upstream 4341 true Chr3: 10784389-10788729 Arabidopsis thaliana
AT3G28730 0.5kb upstream 0.5kb upstream 500 false Chr3: 10784389-10784888 Arabidopsis thaliana
AT3G28730 0.5kb downstream 0.5kb downstream 4341 true Chr3: 10784889-10789229 Arabidopsis thaliana
AT3G28730 0.5kb downstream 0.5kb downstream 500 false Chr3: 10788730-10789229 Arabidopsis thaliana
AT3G28730 1.0kb upstream 1.0kb upstream 4841 true Chr3: 10783889-10788729 Arabidopsis thaliana
AT3G28730 1.0kb upstream 1.0kb upstream 1000 false Chr3: 10783889-10784888 Arabidopsis thaliana
AT3G28730 1.0kb downstream 1.0kb downstream 4841 true Chr3: 10784889-10789729 Arabidopsis thaliana
AT3G28730 1.0kb downstream 1.0kb downstream 1000 false Chr3: 10788730-10789729 Arabidopsis thaliana
AT3G28730 2.0kb upstream 2.0kb upstream 5841 true Chr3: 10782889-10788729 Arabidopsis thaliana
AT3G28730 2.0kb upstream 2.0kb upstream 2000 false Chr3: 10782889-10784888 Arabidopsis thaliana
AT3G28730 2.0kb downstream 2.0kb downstream 5841 true Chr3: 10784889-10790729 Arabidopsis thaliana
AT3G28730 2.0kb downstream 2.0kb downstream 2000 false Chr3: 10788730-10790729 Arabidopsis thaliana
AT3G28730 5.0kb upstream 5.0kb upstream 8841 true Chr3: 10779889-10788729 Arabidopsis thaliana
AT3G28730 5.0kb upstream 5.0kb upstream 5000 false Chr3: 10779889-10784888 Arabidopsis thaliana
AT3G28730 5.0kb downstream 5.0kb downstream 8841 true Chr3: 10784889-10793729 Arabidopsis thaliana
AT3G28730 5.0kb downstream 5.0kb downstream 5000 false Chr3: 10788730-10793729 Arabidopsis thaliana
AT3G28730 10.0kb upstream 10.0kb upstream 13841 true Chr3: 10774889-10788729 Arabidopsis thaliana
AT3G28730 10.0kb upstream 10.0kb upstream 10000 false Chr3: 10774889-10784888 Arabidopsis thaliana
AT3G28730 10.0kb downstream 10.0kb downstream 13841 true Chr3: 10784889-10798729 Arabidopsis thaliana
AT3G28730 10.0kb downstream 10.0kb downstream 10000 false Chr3: 10788730-10798729 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376863 5261 Brassicaceae View MSA
123835840 5264 Brassicales-Malvales View MSA
124342073 5266 SBM View MSA
124242721 5268 Malvidae View MSA
124060640 5270 Rosid View MSA
123744635 5271 Pentapetalae View MSA
122790158 5272 Eudicot View MSA
122041570 5273 Angiosperm View MSA
121347609 5274 Embryophyte View MSA
123424150 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.488        
cufflinks 26.186        
cufflinks 14.289       Low
cufflinks 28.438       High
cufflinks 15.859        
cufflinks 26.903        

0 Strain